RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 ANO10Q9NW15 660 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 UCKL1Q9NWZ5 548 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 HPCAL4Q9UM19 191 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 KNTC1P50748 2209 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 TDRD6O60522 2096 aaKnown RBP16.06■□□□□ 0.16
CPSF1-205ENST00000531042 POM121BA6NF01 834 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 LRRC10BA6NIK2 292 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 SIGLEC16A6NMB1 481 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 A6NNZ2 444 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 RAMP2O60895 175 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 PIAS2O75928 621 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 PAK4O96013 591 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-205ENST00000531042 GSRP00390 522 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 GKP32189 559 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 MYL5Q02045 173 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 UBXN1Q04323 297 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 POLD3Q15054 466 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-205ENST00000531042 MON1BQ7L1V2 547 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 SLFN11Q7Z7L1 901 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 PDZD3Q86UT5 571 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 RYBPQ8N488 228 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-205ENST00000531042 OR2AP1Q8NGE2 309 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 OR4C6Q8NH72 309 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 VOPP1Q96AW1 172 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 NXPE2Q96DL1 559 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 IFT43Q96FT9 208 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 LRIG1Q96JA1 1093 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 ERGIC2Q96RQ1 377 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 CAAP1Q9H8G2 361 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 GPR27Q9NS67 375 aa16.05■□□□□ 0.16
CPSF1-205ENST00000531042 URB1O60287 2271 aaKnown RBP16.05■□□□□ 0.16
CPSF1-205ENST00000531042 TCRBV5S1A1TA0A578 114 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 C16orf96A6NNT2 1141 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 RAD51BO15315 384 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 TSPAN6O43657 245 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 KDELR3O43731 214 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 GIMD1P0DJR0 217 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 ANP32AP39687 249 aaKnown RBP16.04■□□□□ 0.16
CPSF1-205ENST00000531042 ABL2P42684 1182 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 SNRPD1P62314 119 aaKnown RBP16.04■□□□□ 0.16
CPSF1-205ENST00000531042 HS1BP3Q53T59 392 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 ZNF805Q5CZA5 627 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 KYAT3Q6YP21 454 aaKnown RBP16.04■□□□□ 0.16
CPSF1-205ENST00000531042 LEKR1Q6ZMV7 388 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 PTAR1Q7Z6K3 402 aaPredicted RBP16.04■□□□□ 0.16
CPSF1-205ENST00000531042 ZSCAN30Q86W11 494 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 CACTIN-AS1Q8N1I8 211 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 PYROXD2Q8N2H3 581 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 OR6K2Q8NGY2 324 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 RFFLQ8WZ73 363 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 RAB7BQ96AH8 199 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 LENG8Q96PV6 779 aaPredicted RBP16.04■□□□□ 0.16
CPSF1-205ENST00000531042 AGPAT1Q99943 283 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 C1QTNF2Q9BXJ5 285 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 NRSN2Q9GZP1 204 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 SEPT11Q9NVA2 429 aaKnown RBP16.04■□□□□ 0.16
CPSF1-205ENST00000531042 IGSF10Q6WRI0 2623 aa16.04■□□□□ 0.16
CPSF1-205ENST00000531042 LOC400499M0QZD8 3231 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 A0A087WV48 116 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 IGLON5A6NGN9 336 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 KRIT1O00522 736 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 FFAR2O15552 330 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 CCP110O43303 1012 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 POP4O95707 220 aaKnown RBP16.03■□□□□ 0.16
CPSF1-205ENST00000531042 CDK11BP21127 795 aaKnown RBP16.03■□□□□ 0.16
CPSF1-205ENST00000531042 ZNF143P52747 638 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-205ENST00000531042 DAB2P98082 770 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 E2F1Q01094 437 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 INSM1Q01101 510 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-205ENST00000531042 C1QBPQ07021 282 aaKnown RBP16.03■□□□□ 0.16
CPSF1-205ENST00000531042 SGCGQ13326 291 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 FZD2Q14332 565 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 RTP5Q14D33 572 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 STX1AQ16623 288 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 MYLK3Q32MK0 819 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 ZNF542PQ5EBM4 170 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 APTXQ7Z2E3 356 aaKnown RBP16.03■□□□□ 0.16
CPSF1-205ENST00000531042 RTL3Q8N8U3 475 aaKnown RBP16.03■□□□□ 0.16
CPSF1-205ENST00000531042 ASB12Q8WXK4 309 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 GBP4Q96PP9 640 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 KLF6Q99612 283 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-205ENST00000531042 OSBPL1AQ9BXW6 950 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 HSD3B7Q9H2F3 369 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 NOL6Q9H6R4 1146 aaKnown RBP16.03■□□□□ 0.16
CPSF1-205ENST00000531042 DNAJC28Q9NX36 388 aa16.03■□□□□ 0.16
CPSF1-205ENST00000531042 SPTY2D1-AS1A0A0U1RR47 76 aa16.02■□□□□ 0.16
CPSF1-205ENST00000531042 ZSCAN5CA6NGD5 496 aaPredicted RBP16.02■□□□□ 0.16
CPSF1-205ENST00000531042 FPGTO14772 594 aa16.02■□□□□ 0.16
CPSF1-205ENST00000531042 BUB1O43683 1085 aa16.02■□□□□ 0.16
CPSF1-205ENST00000531042 UGT2B4P06133 528 aa16.02■□□□□ 0.16
CPSF1-205ENST00000531042 ALPPL2P10696 532 aa16.02■□□□□ 0.16
CPSF1-205ENST00000531042 CKMT1AP12532 417 aa16.02■□□□□ 0.16
CPSF1-205ENST00000531042 EPHB2P29323 1055 aa16.02■□□□□ 0.16
CPSF1-205ENST00000531042 RABIFP47224 123 aa16.02■□□□□ 0.16
CPSF1-205ENST00000531042 HNRNPKP61978 463 aaKnown RBP eCLIP16.02■□□□□ 0.167e-7■■■■□ 25.3
CPSF1-205ENST00000531042 RPL7AP62424 266 aaKnown RBP16.02■□□□□ 0.16
CPSF1-205ENST00000531042 NCAPHQ15003 741 aa16.02■□□□□ 0.16
CPSF1-205ENST00000531042 EFHC2Q5JST6 749 aa16.02■□□□□ 0.16
CPSF1-205ENST00000531042 PPP1R15BQ5SWA1 713 aa16.02■□□□□ 0.16
CPSF1-205ENST00000531042 ATXN7L2Q5T6C5 722 aaPredicted RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms