RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ARL13BQ3SXY8 428 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 CCDC14Q49A88 953 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 CT47A1Q5JQC4 288 aaPredicted RBP11.55□□□□□ -0.56
VPS28-214ENST00000531032 KDM7AQ6ZMT4 941 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 TMC6Q7Z403 805 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 PARGQ86W56 976 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 ZNF548Q8NEK5 533 aaPredicted RBP11.55□□□□□ -0.56
VPS28-214ENST00000531032 SLC20A1Q8WUM9 679 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 ARHGEF2Q92974 986 aaKnown RBP11.55□□□□□ -0.56
VPS28-214ENST00000531032 RAB7BQ96AH8 199 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 VOPP1Q96AW1 172 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 APOLD1Q96LR9 279 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 LENG8Q96PV6 779 aaPredicted RBP11.55□□□□□ -0.56
VPS28-214ENST00000531032 KLF6Q99612 283 aaPredicted RBP11.55□□□□□ -0.56
VPS28-214ENST00000531032 C1QTNF2Q9BXJ5 285 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 TM6SF2Q9BZW4 377 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 OSBPL2Q9H1P3 480 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 ZDHHC6Q9H6R6 413 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 USP29Q9HBJ7 922 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 NDFIP2Q9NV92 336 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 TMEM248Q9NWD8 314 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 DNAJC28Q9NX36 388 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 HECAQ9UBI9 543 aaPredicted RBP11.55□□□□□ -0.56
VPS28-214ENST00000531032 PCDHB1Q9Y5F3 818 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 C2CD4BA6NLJ0 364 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 C16orf96A6NNT2 1141 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 TSPAN6O43657 245 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 LZTS3O60299 673 aaPredicted RBP11.54□□□□□ -0.56
VPS28-214ENST00000531032 NEBLO76041 1014 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 GFPT2O94808 682 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 LRIG2O94898 1065 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 GSRP00390 522 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 CHRNB2P17787 502 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 SDC4P31431 198 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 ABL2P42684 1182 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 PTPN9P43378 593 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 GSCP56915 257 aaPredicted RBP11.54□□□□□ -0.56
VPS28-214ENST00000531032 JAM2P57087 298 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 PFN3P60673 137 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 CDO1Q16878 200 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 ZNF805Q5CZA5 627 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 ZNF542PQ5EBM4 170 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 STRADAQ7RTN6 431 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 DENND6BQ8NEG7 585 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 OR2AP1Q8NGE2 309 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 OR6K2Q8NGY2 324 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 JOSD2Q8TAC2 188 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 RXFP2Q8WXD0 754 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 ASB12Q8WXK4 309 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 CENPIQ92674 756 aaPredicted RBP11.54□□□□□ -0.56
VPS28-214ENST00000531032 C11orf70Q9BRQ4 267 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 MAGEH1Q9H213 219 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 TAB2Q9NYJ8 693 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 DNAI1Q9UI46 699 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 KLF15Q9UIH9 416 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 RAI2Q9Y5P3 530 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 CSNK1G3Q9Y6M4 447 aa11.54□□□□□ -0.56
VPS28-214ENST00000531032 COL27A1Q8IZC6 1860 aaPredicted RBP11.54□□□□□ -0.56
VPS28-214ENST00000531032 GCN1Q92616 2671 aaKnown RBP11.54□□□□□ -0.56
VPS28-214ENST00000531032 IGLON5A6NGN9 336 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 EIF4E1BA6NMX2 242 aaKnown RBP11.53□□□□□ -0.56
VPS28-214ENST00000531032 FAM72CH0Y354 149 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 H3BM21 787 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 RIOK3O14730 519 aaKnown RBP11.53□□□□□ -0.56
VPS28-214ENST00000531032 FPGTO14772 594 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 EPHB6O15197 1021 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 SPINT1O43278 529 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 RAMP2O60895 175 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 DXOO77932 396 aaKnown RBP11.53□□□□□ -0.56
VPS28-214ENST00000531032 PLEKP08567 350 aaPredicted RBP11.53□□□□□ -0.56
VPS28-214ENST00000531032 MYF5P13349 255 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 GKP32189 559 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 SOX5P35711 763 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 DUSP3P51452 185 aaPredicted RBP11.53□□□□□ -0.56
VPS28-214ENST00000531032 HDAC4P56524 1084 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 POLR2FP61218 127 aaKnown RBP11.53□□□□□ -0.56
VPS28-214ENST00000531032 TLE3Q04726 772 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 PTP4A2Q12974 167 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 SGCGQ13326 291 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 PDE1CQ14123 709 aaPredicted RBP11.53□□□□□ -0.56
VPS28-214ENST00000531032 POLD3Q15054 466 aaPredicted RBP11.53□□□□□ -0.56
VPS28-214ENST00000531032 TPRG1LQ5T0D9 272 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 FAM72AQ5TYM5 149 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 CDKAL1Q5VV42 579 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 FAM72DQ6L9T8 149 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 RWDD4Q6NW29 188 aaKnown RBP11.53□□□□□ -0.56
VPS28-214ENST00000531032 ZCCHC8Q6NZY4 707 aaKnown RBP11.53□□□□□ -0.56
VPS28-214ENST00000531032 TRIM72Q6ZMU5 477 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 FAM72BQ86X60 149 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 CCDC185Q8N715 623 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 SLC30A5Q8TAD4 765 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 ENOX1Q8TC92 643 aaKnown RBP11.53□□□□□ -0.56
VPS28-214ENST00000531032 GPT2Q8TD30 523 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 NTAN1Q96AB6 310 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 TBC1D31Q96DN5 1066 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 ARHGEF26Q96DR7 871 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 DEPDC7Q96QD5 511 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 OSBPL1AQ9BXW6 950 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 EVA1BQ9NVM1 165 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 GGT7Q9UJ14 662 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms