RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ADGRE1Q14246 886 aa21.31■■□□□ 1
VPS28-208ENST00000527797 RANBP10Q6VN20 620 aa21.31■■□□□ 1
VPS28-208ENST00000527797 SYBUQ9NX95 663 aa21.31■■□□□ 1
VPS28-208ENST00000527797 SAMD15Q9P1V8 674 aa21.31■■□□□ 1
VPS28-208ENST00000527797 GGA2Q9UJY4 613 aa21.31■■□□□ 1
VPS28-208ENST00000527797 C2orf16Q68DN1 1984 aa21.31■■□□□ 1
VPS28-208ENST00000527797 CHD5Q8TDI0 1954 aa21.31■■□□□ 1
VPS28-208ENST00000527797 RANBP2P49792 3224 aaKnown RBP21.31■■□□□ 1
VPS28-208ENST00000527797 TLDC2A0PJX2 215 aa21.3■■□□□ 1
VPS28-208ENST00000527797 TCEA3O75764 348 aa21.3■■□□□ 1
VPS28-208ENST00000527797 NFATC1O95644 943 aa21.3■■□□□ 1
VPS28-208ENST00000527797 SERPINF2P08697 491 aa21.3■■□□□ 1
VPS28-208ENST00000527797 ADH5P11766 374 aa21.3■■□□□ 1
VPS28-208ENST00000527797 PABPC1P11940 636 aaKnown RBP21.3■■□□□ 1
VPS28-208ENST00000527797 GBP2P32456 591 aaPredicted RBP21.3■■□□□ 1
VPS28-208ENST00000527797 SCNN1BP51168 640 aa21.3■■□□□ 1
VPS28-208ENST00000527797 MLLT1Q03111 559 aaPredicted RBP21.3■■□□□ 1
VPS28-208ENST00000527797 DMC1Q14565 340 aa21.3■■□□□ 1
VPS28-208ENST00000527797 SLC14A2Q15849 920 aa21.3■■□□□ 1
VPS28-208ENST00000527797 TRIM68Q6AZZ1 485 aa21.3■■□□□ 1
VPS28-208ENST00000527797 ASTLQ6HA08 431 aaPredicted RBP21.3■■□□□ 1
VPS28-208ENST00000527797 TANGO2Q6ICL3 276 aa21.3■■□□□ 1
VPS28-208ENST00000527797 KDELC2Q7Z4H8 507 aa21.3■■□□□ 1
VPS28-208ENST00000527797 METTL3Q86U44 580 aaKnown RBP21.3■■□□□ 1
VPS28-208ENST00000527797 FBF1Q8TES7 1133 aa21.3■■□□□ 1
VPS28-208ENST00000527797 XPO6Q96QU8 1125 aaKnown RBP21.3■■□□□ 1
VPS28-208ENST00000527797 MYADMQ96S97 322 aa21.3■■□□□ 1
VPS28-208ENST00000527797 CENPHQ9H3R5 247 aa21.3■■□□□ 1
VPS28-208ENST00000527797 SCUBE2Q9NQ36 999 aa21.3■■□□□ 1
VPS28-208ENST00000527797 NUP210Q8TEM1 1887 aaPredicted RBP21.3■■□□□ 1
VPS28-208ENST00000527797 INSIG1O15503 277 aa21.29■■□□□ 1
VPS28-208ENST00000527797 TPH1P17752 444 aa21.29■■□□□ 1
VPS28-208ENST00000527797 PGAM1P18669 254 aa21.29■■□□□ 1
VPS28-208ENST00000527797 CR2P20023 1033 aa21.29■■□□□ 1
VPS28-208ENST00000527797 LTBRP36941 435 aa21.29■■□□□ 1
VPS28-208ENST00000527797 RGRP47804 291 aa21.29■■□□□ 1
VPS28-208ENST00000527797 SERPINH1P50454 418 aaKnown RBP21.29■■□□□ 1
VPS28-208ENST00000527797 RHOAP61586 193 aa21.29■■□□□ 1
VPS28-208ENST00000527797 CRADDP78560 199 aa21.29■■□□□ 1
VPS28-208ENST00000527797 NSUN2Q08J23 767 aaKnown RBP eCLIP21.29■■□□□ 1
VPS28-208ENST00000527797 PDGFRLQ15198 375 aa21.29■■□□□ 1
VPS28-208ENST00000527797 LONRF1Q17RB8 773 aa21.29■■□□□ 1
VPS28-208ENST00000527797 UNC5AQ6ZN44 842 aa21.29■■□□□ 1
VPS28-208ENST00000527797 NAT16Q8N8M0 369 aa21.29■■□□□ 1
VPS28-208ENST00000527797 EPS8L3Q8TE67 593 aaKnown RBP21.29■■□□□ 1
VPS28-208ENST00000527797 ATP2A3Q93084 1043 aa21.29■■□□□ 1
VPS28-208ENST00000527797 ARL8AQ96BM9 186 aa21.29■■□□□ 1
VPS28-208ENST00000527797 MSLNLQ96KJ4 702 aa21.29■■□□□ 1
VPS28-208ENST00000527797 NUDCD1Q96RS6 583 aa21.29■■□□□ 1
VPS28-208ENST00000527797 IL22Q9GZX6 179 aa21.29■■□□□ 1
VPS28-208ENST00000527797 RABGEF1Q9UJ41 708 aa21.29■■□□□ 1
VPS28-208ENST00000527797 FCF1Q9Y324 198 aaKnown RBP21.29■■□□□ 1
VPS28-208ENST00000527797 MYO18AQ92614 2054 aaKnown RBP21.29■■□□□ 1
VPS28-208ENST00000527797 EXOC1LA0A1B0GW35 172 aa21.29■■□□□ 1
VPS28-208ENST00000527797 MAGEB16A2A368 324 aa21.29■■□□□ 1
VPS28-208ENST00000527797 SMIM23A6NLE4 172 aa21.29■■□□□ 1
VPS28-208ENST00000527797 HOXC11O43248 304 aaPredicted RBP21.29■■□□□ 1
VPS28-208ENST00000527797 MT-CO1P00395 513 aa21.29■■□□□ 1
VPS28-208ENST00000527797 OAS2P29728 719 aaKnown RBP21.29■■□□□ 1
VPS28-208ENST00000527797 STX2P32856 288 aa21.29■■□□□ 1
VPS28-208ENST00000527797 SLCO1A2P46721 670 aa21.29■■□□□ 1
VPS28-208ENST00000527797 IHHQ14623 411 aa21.29■■□□□ 1
VPS28-208ENST00000527797 COL19A1Q14993 1142 aa21.29■■□□□ 1
VPS28-208ENST00000527797 KLHL38Q2WGJ6 581 aa21.29■■□□□ 1
VPS28-208ENST00000527797 FUT11Q495W5 492 aa21.29■■□□□ 1
VPS28-208ENST00000527797 CERCAMQ5T4B2 595 aa21.29■■□□□ 1
VPS28-208ENST00000527797 DENND5AQ6IQ26 1287 aa21.29■■□□□ 1
VPS28-208ENST00000527797 GSDMBQ8TAX9 411 aa21.29■■□□□ 1
VPS28-208ENST00000527797 ASIC4Q96FT7 647 aa21.29■■□□□ 1
VPS28-208ENST00000527797 EXOC2Q96KP1 924 aa21.29■■□□□ 1
VPS28-208ENST00000527797 FAM83CQ9BQN1 747 aa21.29■■□□□ 1
VPS28-208ENST00000527797 ACSS3Q9H6R3 686 aa21.29■■□□□ 1
VPS28-208ENST00000527797 PPCSQ9HAB8 311 aa21.29■■□□□ 1
VPS28-208ENST00000527797 ARNT2Q9HBZ2 717 aa21.29■■□□□ 1
VPS28-208ENST00000527797 NOD2Q9HC29 1040 aa21.29■■□□□ 1
VPS28-208ENST00000527797 TCRBV9S1A1TA0A576 114 aa21.28■■□□□ 1
VPS28-208ENST00000527797 ATP9BO43861 1147 aa21.28■■□□□ 1
VPS28-208ENST00000527797 GJB3O75712 270 aa21.28■■□□□ 1
VPS28-208ENST00000527797 LAMP2P13473 410 aa21.28■■□□□ 1
VPS28-208ENST00000527797 ARSAP15289 507 aa21.28■■□□□ 1
VPS28-208ENST00000527797 SULT2A1Q06520 285 aa21.28■■□□□ 1
VPS28-208ENST00000527797 VITQ6UXI7 678 aa21.28■■□□□ 1
VPS28-208ENST00000527797 MICALL1Q8N3F8 863 aa21.28■■□□□ 1
VPS28-208ENST00000527797 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.28■■□□□ 14e-6■□□□□ 11.3
VPS28-208ENST00000527797 ST13P5Q8NFI4 369 aaPredicted RBP21.28■■□□□ 1
VPS28-208ENST00000527797 IFT43Q96FT9 208 aa21.28■■□□□ 1
VPS28-208ENST00000527797 FEM1CQ96JP0 617 aa21.28■■□□□ 1
VPS28-208ENST00000527797 ZFYVE19Q96K21 471 aa21.28■■□□□ 1
VPS28-208ENST00000527797 EBF3Q9H4W6 596 aa21.28■■□□□ 1
VPS28-208ENST00000527797 BCCIPQ9P287 314 aaKnown RBP eCLIP21.28■■□□□ 1
VPS28-208ENST00000527797 LHX3Q9UBR4 397 aa21.28■■□□□ 1
VPS28-208ENST00000527797 FBXO10Q9UK96 956 aa21.28■■□□□ 1
VPS28-208ENST00000527797 TRANK1O15050 2925 aa21.27■■□□□ 1
VPS28-208ENST00000527797 LOC285095A0A1B0GVY8 99 aa21.27■■□□□ 1
VPS28-208ENST00000527797 RNF40O75150 1001 aa21.27■■□□□ 1
VPS28-208ENST00000527797 POLBP06746 335 aa21.27■■□□□ 1
VPS28-208ENST00000527797 CDK18Q07002 472 aa21.27■■□□□ 1
VPS28-208ENST00000527797 TTMPQ5BVD1 217 aa21.27■■□□□ 1
VPS28-208ENST00000527797 RALGPS1Q5JS13 557 aa21.27■■□□□ 1
VPS28-208ENST00000527797 STEAP4Q687X5 459 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms