RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 TP53BP1Q12888 1972 aaPredicted RBP13.91□□□□□ -0.18
CD44-224ENST00000526669 TCRBV21S2A2A0A5A6 115 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 CFAP69A5D8W1 941 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 SYNCRIPO60506 623 aaKnown RBP13.91□□□□□ -0.18
CD44-224ENST00000526669 STK10O94804 968 aaKnown RBP13.91□□□□□ -0.18
CD44-224ENST00000526669 PIGNO95427 931 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 GSRP00390 522 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 ITGAVP06756 1048 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 ZSCAN5DPP0CG00 497 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 NFKB1P19838 968 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 CD68P34810 354 aaPredicted RBP13.91□□□□□ -0.18
CD44-224ENST00000526669 RECQLP46063 649 aaPredicted RBP13.91□□□□□ -0.18
CD44-224ENST00000526669 PSMD8P48556 350 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 SCNN1BP51168 640 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 TERF1P54274 439 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 MRPS25P82663 173 aaKnown RBP13.91□□□□□ -0.18
CD44-224ENST00000526669 SATB1Q01826 763 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 NIPAL4Q0D2K0 466 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 MTAPQ13126 283 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 E2F5Q15329 346 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 POM121L1PQ3SYA9 428 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 ANKRD20A2Q5SQ80 823 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 FAXCQ5TGI0 409 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 ANKRD20A1Q5TYW2 823 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 ANKRD20A3Q5VUR7 823 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 DRICH1Q6PGQ1 229 aaPredicted RBP13.91□□□□□ -0.18
CD44-224ENST00000526669 PID1Q7Z2X4 250 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 METTL3Q86U44 580 aaKnown RBP13.91□□□□□ -0.18
CD44-224ENST00000526669 OR2AP1Q8NGE2 309 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 OR2A12Q8NGT7 310 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 OR8D1Q8WZ84 308 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 FATE1Q969F0 183 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 ISG20Q96AZ6 181 aaKnown RBP13.91□□□□□ -0.18
CD44-224ENST00000526669 TEKT5Q96M29 485 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 NSMCE3Q96MG7 304 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 PSKH2Q96QS6 385 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 KRT12Q99456 494 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 SEMA3CQ99985 751 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 FERMT1Q9BQL6 677 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 MGME1Q9BQP7 344 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 GLOD4Q9HC38 313 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 SCUBE2Q9NQ36 999 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 HOMER3Q9NSC5 361 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 DLGAP2Q9P1A6 1054 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 DRG1Q9Y295 367 aaKnown RBP13.91□□□□□ -0.18
CD44-224ENST00000526669 ATP8A1Q9Y2Q0 1164 aa13.91□□□□□ -0.18
CD44-224ENST00000526669 FANCMQ8IYD8 2048 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 CXorf51AA0A1B0GTR3 108 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 A0A1W2PQF6 199 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 TARSL2A2RTX5 802 aaKnown RBP13.9□□□□□ -0.18
CD44-224ENST00000526669 CHURC1-FNTBB4DL54 471 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 CCDC188H7C350 402 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 MTSS1O43312 755 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 CTSLP07711 333 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 PSMB4P28070 264 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 RPS9P46781 194 aaKnown RBP13.9□□□□□ -0.18
CD44-224ENST00000526669 VPS41P49754 854 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 CAMK2GQ13555 558 aaPredicted RBP13.9□□□□□ -0.18
CD44-224ENST00000526669 HSF5Q4G112 596 aaPredicted RBP13.9□□□□□ -0.18
CD44-224ENST00000526669 ARHGEF18Q6ZSZ5 1173 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 TMEM105Q8N8V8 129 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 CCDC89Q8N998 374 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 SPATA4Q8NEY3 305 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 ATL2Q8NHH9 583 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 SPATA13Q96N96 652 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 RBM15Q96T37 977 aaKnown RBP eCLIP13.9□□□□□ -0.18
CD44-224ENST00000526669 FAM129BQ96TA1 746 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 POLR1EQ9GZS1 481 aaKnown RBP13.9□□□□□ -0.18
CD44-224ENST00000526669 NOD2Q9HC29 1040 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 SPATA6Q9NWH7 488 aaPredicted RBP13.9□□□□□ -0.18
CD44-224ENST00000526669 UBP1Q9NZI7 540 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 RSPH14Q9UHP6 348 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 WASF2Q9Y6W5 498 aa13.9□□□□□ -0.18
CD44-224ENST00000526669 PLXNA2O75051 1894 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 C5orf60A6NFR6 353 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 PLK4O00444 970 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 ATG13O75143 517 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 LEFTY1O75610 366 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 KRT14P02533 472 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 UGT2B4P06133 528 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 CR2P20023 1033 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 CHRNA3P32297 505 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 HSPA9P38646 679 aaKnown RBP13.89□□□□□ -0.19
CD44-224ENST00000526669 CD86P42081 329 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 FNTAP49354 379 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 METAP1P53582 386 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 COPAP53621 1224 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 IHHQ14623 411 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 CRY1Q16526 586 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 MYLK3Q32MK0 819 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 ARSIQ5FYB1 569 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 SYCP2LQ5T4T6 812 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 KIAA1324Q6UXG2 1013 aaKnown RBP13.89□□□□□ -0.19
CD44-224ENST00000526669 SYT13Q7L8C5 426 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 MMAAQ8IVH4 418 aaKnown RBP13.89□□□□□ -0.19
CD44-224ENST00000526669 SPEM1Q8N4L4 309 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 FBXL6Q8N531 539 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 OR2T3Q8NH03 318 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 SPATA22Q8NHS9 363 aa13.89□□□□□ -0.19
CD44-224ENST00000526669 PIP4K2CQ8TBX8 421 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms