RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	KIAA1324	Q6UXG2	1013 aa	Known RBP	21.05	■□□□□ 0.96
CD44-222	ENST00000526025	KBTBD6	Q86V97	674 aa		21.05	■□□□□ 0.96
CD44-222	ENST00000526025	MMAA	Q8IVH4	418 aa	Known RBP	21.05	■□□□□ 0.96
CD44-222	ENST00000526025	TSEN2	Q8NCE0	465 aa	Known RBP	21.05	■□□□□ 0.96
CD44-222	ENST00000526025	CHST14	Q8NCH0	376 aa		21.05	■□□□□ 0.96
CD44-222	ENST00000526025	PIP4K2C	Q8TBX8	421 aa		21.05	■□□□□ 0.96
CD44-222	ENST00000526025	FAM131C	Q96AQ9	280 aa		21.05	■□□□□ 0.96
CD44-222	ENST00000526025	TUBGCP5	Q96RT8	1024 aa		21.05	■□□□□ 0.96
CD44-222	ENST00000526025	VAT1	Q99536	393 aa		21.05	■□□□□ 0.96
CD44-222	ENST00000526025	TTC7A	Q9ULT0	858 aa	Predicted RBP	21.05	■□□□□ 0.96
CD44-222	ENST00000526025	ZKSCAN5	Q9Y2L8	839 aa		21.05	■□□□□ 0.96
CD44-222	ENST00000526025	ARIH1	Q9Y4X5	557 aa	Predicted RBP	21.05	■□□□□ 0.96
CD44-222	ENST00000526025	BNIP3L	O60238	219 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	IL1B	P01584	269 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	ATP1A1	P05023	1023 aa	Known RBP	21.04	■□□□□ 0.96
CD44-222	ENST00000526025	ACADM	P11310	421 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	OXTR	P30559	389 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	SLC8A1	P32418	973 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	P2RY2	P41231	377 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	PXN	P49023	591 aa	Predicted RBP	21.04	■□□□□ 0.96
CD44-222	ENST00000526025	MAP7D1	Q3KQU3	841 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	21.04	■□□□□ 0.96
CD44-222	ENST00000526025	HEATR6	Q6AI08	1181 aa	Known RBP	21.04	■□□□□ 0.96
CD44-222	ENST00000526025	CDKL3	Q8IVW4	592 aa	Predicted RBP	21.04	■□□□□ 0.96
CD44-222	ENST00000526025	RASGEF1C	Q8N431	466 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	GAB3	Q8WWW8	586 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	VOPP1	Q96AW1	172 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	HAUS1	Q96CS2	278 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	ZNF419	Q96HQ0	510 aa	Predicted RBP	21.04	■□□□□ 0.96
CD44-222	ENST00000526025	SPACA7	Q96KW9	195 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	NUDCD1	Q96RS6	583 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	FERMT1	Q9BQL6	677 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	SLC6A17	Q9H1V8	727 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	FZD4	Q9ULV1	537 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	SNX12	Q9UMY4	172 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	ATP8A1	Q9Y2Q0	1164 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	CEP192	Q8TEP8	1941 aa		21.04	■□□□□ 0.96
CD44-222	ENST00000526025	MUSK	O15146	869 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	SLC7A4	O43246	635 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	LEFTY1	O75610	366 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	PRLR	P16471	622 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	TCP1	P17987	556 aa	Known RBP	21.03	■□□□□ 0.96
CD44-222	ENST00000526025	PSMD8	P48556	350 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	TPMT	P51580	245 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	EIF3E	P60228	445 aa	Known RBP	21.03	■□□□□ 0.96
CD44-222	ENST00000526025	CCDC15	Q0P6D6	951 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	SRL	Q86TD4	932 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	PGBD5	Q8N414	524 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	HCAR2	Q8TDS4	363 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	PPP1R16A	Q96I34	528 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	ZNF641	Q96N77	438 aa	Predicted RBP	21.03	■□□□□ 0.96
CD44-222	ENST00000526025	WDR24	Q96S15	920 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	TPSD1	Q9BZJ3	242 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	POLR1E	Q9GZS1	481 aa	Known RBP	21.03	■□□□□ 0.96
CD44-222	ENST00000526025	RBM22	Q9NW64	420 aa	Known RBP eCLIP	21.03	■□□□□ 0.96
CD44-222	ENST00000526025	SARDH	Q9UL12	918 aa		21.03	■□□□□ 0.96
CD44-222	ENST00000526025	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	21.02	■□□□□ 0.96
CD44-222	ENST00000526025	BCLAF3	A2AJT9	711 aa	Known RBP	21.02	■□□□□ 0.96
CD44-222	ENST00000526025	KCNK1	O00180	336 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	MID1	O15344	667 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	CEP104	O60308	925 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	RBP3	P10745	1247 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	ITGB7	P26010	798 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	RGR	P47804	291 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	ARSI	Q5FYB1	569 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	PAPD7	Q5XG87	772 aa	Known RBP	21.02	■□□□□ 0.96
CD44-222	ENST00000526025	ZC3H18	Q86VM9	953 aa	Known RBP	21.02	■□□□□ 0.96
CD44-222	ENST00000526025	RYBP	Q8N488	228 aa	Predicted RBP	21.02	■□□□□ 0.96
CD44-222	ENST00000526025	SLC35B2	Q8TB61	432 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	GRIN3A	Q8TCU5	1115 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	HTR3C	Q8WXA8	447 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	SPOCK2	Q92563	424 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	ERLEC1	Q96DZ1	483 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	EXOC2	Q96KP1	924 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	OSBPL9	Q96SU4	736 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	NAP1L3	Q99457	506 aa	Predicted RBP	21.02	■□□□□ 0.96
CD44-222	ENST00000526025	NAPG	Q99747	312 aa	Predicted RBP	21.02	■□□□□ 0.96
CD44-222	ENST00000526025	HDAC8	Q9BY41	377 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	ZDHHC6	Q9H6R6	413 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	NT5M	Q9NPB1	228 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	EVL	Q9UI08	416 aa	Predicted RBP	21.02	■□□□□ 0.96
CD44-222	ENST00000526025	NCKAP1	Q9Y2A7	1128 aa		21.02	■□□□□ 0.96
CD44-222	ENST00000526025	TCRBV7S2A1N4T	A0A589	114 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025	CTAGE9	A4FU28	777 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025		H0Y858	1186 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025		H7C0C1	242 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025	KRIT1	O00522	736 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025	RPP40	O75818	363 aa	Known RBP	21.01	■□□□□ 0.95
CD44-222	ENST00000526025	NEBL	O76041	1014 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025	JCHAIN	P01591	159 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025	FGG	P02679	453 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025	CXCR5	P32302	372 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025	ATP5O	P48047	213 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025	ETF1	P62495	437 aa	Known RBP	21.01	■□□□□ 0.95
CD44-222	ENST00000526025	ZBTB17	Q13105	803 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025	TEX44	Q53QW1	395 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025	ZNF805	Q5CZA5	627 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025	DRICH1	Q6PGQ1	229 aa	Predicted RBP	21.01	■□□□□ 0.95
CD44-222	ENST00000526025	NCEH1	Q6PIU2	408 aa		21.01	■□□□□ 0.95
CD44-222	ENST00000526025	SLC36A4	Q6YBV0	504 aa		21.01	■□□□□ 0.95

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms