RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 HAPLN3Q96S86 360 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 FAM129BQ96TA1 746 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 FEM1AQ9BSK4 669 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 GTPBP2Q9BX10 602 aaKnown RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 EPN3Q9H201 632 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 GANQ9H2C0 597 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 PABPC3Q9H361 631 aaKnown RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 RETREG1Q9H6L5 497 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 PIGVQ9NUD9 493 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 TAB2Q9NYJ8 693 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ADAMTS1Q9UHI8 967 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 SLCO3A1Q9UIG8 710 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 TMEM59LQ9UK28 342 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ANGPTL2Q9UKU9 493 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 FZD4Q9ULV1 537 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 TPX2Q9ULW0 747 aaKnown RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 HS3ST4Q9Y661 456 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 SAR1BQ9Y6B6 198 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 CAPN7Q9Y6W3 813 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 PCDH15Q96QU1 1955 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 MUC22E2RYF6 1773 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ADAMTS9Q9P2N4 1935 aa8.21□□□□□ -1.09
SCN1A-207ENST00000507401 SYNJ2BP-COX16A0A087WUM0 186 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 TTC34A8MYJ7 566 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 HMGB1P1B2RPK0 211 aaPredicted RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 C10orf142B7Z368 130 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 KRT86O43790 486 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 SIN3BO75182 1162 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 SEMA4FO95754 770 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 MMEP08473 750 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 C5AR1P21730 350 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 MMP8P22894 467 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 CD27P26842 260 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 MZF1P28698 734 aaPredicted RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 SOX5P35711 763 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 STAT1P42224 750 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 AFF3P51826 1226 aaKnown RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 COPB1P53618 953 aaKnown RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 RNASE9P60153 205 aaKnown RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 POLR2FP61218 127 aaKnown RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 NOMO3P69849 1222 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 DEUP1Q05D60 604 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 ELAVL3Q14576 367 aaKnown RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 CST6Q15828 149 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 FAM102AQ5T9C2 384 aaPredicted RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 CXorf57Q6NSI4 855 aaKnown RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 CCNI2Q6ZMN8 369 aaPredicted RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 TRIM72Q6ZMU5 477 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 DBX2Q6ZNG2 339 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 SETD3Q86TU7 594 aaPredicted RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 CCDC170Q8IYT3 715 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 MMGT1Q8N4V1 131 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 MREGQ8N565 214 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 N4BP2L2Q92802 583 aaPredicted RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 BIRC7Q96CA5 298 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 SGSM3Q96HU1 749 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 SPAG5Q96R06 1193 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 TKTL2Q9H0I9 626 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 C6orf106Q9H6K1 298 aaPredicted RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 FBXL12Q9NXK8 326 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 COX16Q9P0S2 106 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 EIF2B4Q9UI10 523 aaKnown RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 NOCTQ9UK39 431 aaKnown RBP8.21□□□□□ -1.1
SCN1A-207ENST00000507401 VANGL2Q9ULK5 521 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 SIK3Q9Y2K2 1263 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 PCDHGB2Q9Y5G2 931 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 OR51B4Q9Y5P0 310 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 ACACBO00763 2458 aa8.21□□□□□ -1.1
SCN1A-207ENST00000507401 TPRP12270 2363 aaKnown RBP8.2□□□□□ -1.1
SCN1A-207ENST00000507401 IGLV3-10A0A075B6K4 115 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 CXorf51AA0A1B0GTR3 108 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 LRRC72A6NJI9 287 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 LGALS16A8MUM7 142 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 GIPC1O14908 333 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 MCF2LO15068 1137 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 ALOX15BO15296 676 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 SLC7A4O43246 635 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 ATP9BO43861 1147 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 DFNA5O60443 496 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 GFPT2O94808 682 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 TRIM16O95361 564 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 GSTA1P08263 222 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 UNGP13051 313 aaPredicted RBP8.2□□□□□ -1.1
SCN1A-207ENST00000507401 ATP1A3P13637 1013 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 CD59P13987 128 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 PDGFRAP16234 1089 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 GOT1P17174 413 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 CHRNB2P17787 502 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 PBX1P40424 430 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 SCTRP47872 440 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 SULT1E1P49888 294 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 CCR5P51681 352 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 GALCP54803 685 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 ADCY2Q08462 1091 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 RIPK1Q13546 671 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 TEAD4Q15561 434 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 OTUD1Q5VV17 481 aaPredicted RBP8.2□□□□□ -1.1
SCN1A-207ENST00000507401 FAM46CQ5VWP2 391 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 FOXR1Q6PIV2 292 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms