RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 LSMEM2Q8N112 164 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SREK1Q8WXA9 508 aaKnown RBP16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DTNBP1Q96EV8 351 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 AP5M1Q9H0R1 490 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TSPYL2Q9H2G4 693 aaPredicted RBP16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RHOJQ9H4E5 214 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 WDCPQ9H6R7 721 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ZDHHC2Q9UIJ5 367 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PACSIN3Q9UKS6 424 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 BLOC1S6Q9UL45 172 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 NEMP1O14524 444 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CABYRO75952 493 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PIGNO95427 931 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 AHSGP02765 367 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 THRAP10827 490 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 EPHA3P29320 983 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CD151P48509 253 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 AFF1P51825 1210 aaKnown RBP16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 XIAPP98170 497 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 NSUN2Q08J23 767 aaKnown RBP eCLIP16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 KCNA10Q16322 511 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 LHX8Q68G74 356 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 NAPEPLDQ6IQ20 393 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SNX32Q86XE0 403 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CENPLQ8N0S6 344 aaPredicted RBP16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CPSF7Q8N684 471 aaKnown RBP16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 STYXQ8WUJ0 223 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 KCTD4Q8WVF5 259 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TSGA13Q96PP4 275 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RHOBTB2Q9BYZ6 727 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 FAM192AQ9GZU8 254 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 MID2Q9UJV3 735 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RUVBL2Q9Y230 463 aaKnown RBP16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TBC1D30Q9Y2I9 924 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RGSL1A5PLK6 1076 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 AIM2O14862 343 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 F9P00740 461 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 GNRH1P01148 92 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CCL5P13501 91 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TFEBP19484 476 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SAT1P21673 171 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SERPINB6P35237 376 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 AVPR1AP37288 418 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 USP10Q14694 798 aaKnown RBP16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ARMC3Q5W041 872 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SEL1L3Q68CR1 1132 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TWF2Q6IBS0 349 aaKnown RBP16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ARHGAP36Q6ZRI8 547 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 MFSD6LQ8IWD5 586 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 C3orf58Q8NDZ4 430 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SPATA22Q8NHS9 363 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 USP33Q8TEY7 942 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PPP1R36Q96LQ0 422 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.3■□□□□ 0.27e-6■■■■□ 23.5
MSH5-SAPCD1-208ENST00000498473 TLK1Q9UKI8 766 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 NEU3Q9UQ49 428 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 FRMPD3Q5JV73 1810 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ADAMTS4O75173 837 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DUSP11O75319 330 aaKnown RBP16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 JUNP05412 331 aaKnown RBP16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ASGR1P07306 291 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 GLRBP48167 497 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 LHX1P48742 406 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 NAGLUP54802 743 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DLG1Q12959 904 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ARHGEF6Q15052 776 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TRIP10Q15642 601 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TMC7Q7Z402 723 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TAC4Q86UU9 113 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SLC41A1Q8IVJ1 513 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 FSTL5Q8N475 847 aaPredicted RBP16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ZNF419Q96HQ0 510 aaPredicted RBP16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 GPR78Q96P69 363 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 GBP5Q96PP8 586 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CCDC28BQ9BUN5 200 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 VCX3BQ9H321 246 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 NSMCE4AQ9NXX6 385 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RRN3Q9NYV6 651 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 STK39Q9UEW8 545 aa16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 G3BP2Q9UN86 482 aaKnown RBP16.3■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PEX1O43933 1283 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 VCLP18206 1134 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 NUDT2P50583 147 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ZNF135P52742 658 aaPredicted RBP16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PRKAA2P54646 552 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PRPSAP1Q14558 356 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PPP2R5DQ14738 602 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 OGFRL1Q5TC84 451 aaPredicted RBP16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PKN3Q6P5Z2 889 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DCLRE1AQ6PJP8 1040 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CNTN4Q8IWV2 1026 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DSELQ8IZU8 1212 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 NUF2Q9BZD4 464 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 MIOSQ9NXC5 875 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PRPF19Q9UMS4 504 aaKnown RBP16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CEP290O15078 2479 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DLX3O60479 287 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DDHD2O94830 711 aa16.29■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RANBP1P43487 201 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms