RNA–Protein interactions for RNA: ENST00000496946.1

SNRNP48-202, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

TSL 2

Gene SNRNP48, Length 2,610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-202ENST00000496946 SMURF1Q9HCE7 757 aa3.17□□□□□ -1.9
SNRNP48-202ENST00000496946 FAM114A2Q9NRY5 505 aa3.17□□□□□ -1.9
SNRNP48-202ENST00000496946 RIC8BQ9NVN3 520 aa3.17□□□□□ -1.9
SNRNP48-202ENST00000496946 UCKL1Q9NWZ5 548 aa3.17□□□□□ -1.9
SNRNP48-202ENST00000496946 LRFN1Q9P244 771 aa3.17□□□□□ -1.9
SNRNP48-202ENST00000496946 DNAJB4Q9UDY4 337 aa3.17□□□□□ -1.9
SNRNP48-202ENST00000496946 CPSF3Q9UKF6 684 aaKnown RBP3.17□□□□□ -1.9
SNRNP48-202ENST00000496946 CDC42EP3Q9UKI2 254 aa3.17□□□□□ -1.9
SNRNP48-202ENST00000496946 FAF1Q9UNN5 650 aaPredicted RBP3.17□□□□□ -1.9
SNRNP48-202ENST00000496946 TNFSF13BQ9Y275 285 aa3.17□□□□□ -1.9
SNRNP48-202ENST00000496946 KIF21AQ7Z4S6 1674 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SOGA1O94964 1423 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 LOC390937A0A1W2PQ73 354 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 hCG_1807616A0A1W2PRN6 198 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PRSS44E7EML9 344 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 K7ERQ8 282 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SLC9A3R1O14745 358 aaPredicted RBP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 FPGTO14772 594 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 CLDN3O15551 220 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PEX10O60683 326 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 CIAO1O76071 339 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SNAPINO95295 136 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 CHEK2O96017 543 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 ITGA2BP08514 1039 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 HOXB8P17481 243 aaPredicted RBP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 CTNNB1P35222 781 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 HOXD13P35453 343 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PIK3CBP42338 1070 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 ALDH1A3P47895 512 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 IST1P53990 364 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 AIF1P55008 147 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PRAMEP78395 509 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 RHAGQ02094 409 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 C2orf54Q08AI8 447 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 BFSP1Q12934 665 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 ZNF177Q13360 481 aaPredicted RBP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 STARD3Q14849 445 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 KCTD21Q4G0X4 260 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 THEM4Q5T1C6 240 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 MAP3K21Q5TCX8 1036 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SNRNP48Q6IEG0 339 aaKnown RBP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 CENPPQ6IPU0 288 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 DEGS2Q6QHC5 323 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 RFX8Q6ZV50 586 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 C16orf59Q7L2K0 433 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SLFN11Q7Z7L1 901 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 DSG4Q86SJ6 1040 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 FAM228AQ86W67 206 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 MICU3Q86XE3 530 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 UNC5CLQ8IV45 518 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 GRAMD1CQ8IYS0 662 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 LINC00518Q8N0U6 118 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PLD5Q8N7P1 536 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 TRPV1Q8NER1 839 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 Q8NFD4 153 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SLC24A4Q8NFF2 622 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PPP1R35Q8TAP8 253 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 HTRA1Q92743 480 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 ZUFSPQ96AP4 578 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 TRIM43Q96BQ3 446 aaPredicted RBP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 AHCYL2Q96HN2 611 aaKnown RBP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 MED15Q96RN5 788 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SH3GL2Q99962 352 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PSD2Q9BQI7 771 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 HEPHQ9BQS7 1158 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SPATA6Q9NWH7 488 aaPredicted RBP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 STX18Q9P2W9 335 aaKnown RBP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PYCARDQ9ULZ3 195 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 ARHGAP26Q9UNA1 814 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 NAALAD2Q9Y3Q0 740 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 X6R8D5 127 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 IRS2Q9Y4H2 1338 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 A0A1W2PPW3 197 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 GSTTP1A0A1W2PQM5 241 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 ARGFXA6NJG6 315 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SRRM3A6NNA2 597 aaPredicted RBP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 FZD9O00144 591 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 TRAF5O00463 557 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 FBP2O00757 339 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SYN3O14994 580 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PROM1O43490 865 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PLA2G6O60733 806 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SEMA7AO75326 666 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 MED24O75448 989 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 GJB3O75712 270 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 CBR3O75828 277 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SOAT2O75908 522 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PDE5AO76074 875 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 SCAF4O95104 1147 aaKnown RBP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 GNA14O95837 355 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 OPN1LWP04000 364 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 ASLP04424 464 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 CKMP06732 381 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PRPS2P11908 318 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PRG2P13727 222 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 YBX3P16989 372 aaKnown RBP eCLIP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 GLRA2P23416 452 aa3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 EEF1DP29692 281 aaKnown RBP3.16□□□□□ -1.9
SNRNP48-202ENST00000496946 PDHA2P29803 388 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms