RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	ITGAX	P20702	1163 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	TNFAIP3	P21580	790 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	PKLR	P30613	574 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	LTBR	P36941	435 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	PPARG	P37231	505 aa	Predicted RBP	11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	CCR3	P51677	355 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	GNG2	P59768	71 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	OTUD4	Q01804	1114 aa	Known RBP	11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	CENPC	Q03188	943 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	KCNH2	Q12809	1159 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	RAB33A	Q14088	237 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	SETMAR	Q53H47	684 aa	Predicted RBP	11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	KRBOX4	Q5JUW0	171 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	ELMSAN1	Q6PJG2	1045 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	MAMDC2	Q7Z304	686 aa	Predicted RBP	11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	GPR141	Q7Z602	305 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	IRF2BP1	Q8IU81	584 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	TMEM86A	Q8N2M4	240 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	C12orf76	Q8N812	135 aa	Predicted RBP	11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	TTC13	Q8NBP0	860 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	KREMEN2	Q8NCW0	462 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	SLC22A17	Q8WUG5	538 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	SEMA4D	Q92854	862 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	MRPL45	Q9BRJ2	306 aa	Known RBP	11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	BTBD2	Q9BX70	525 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	GRIP2	Q9C0E4	1043 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	ZNF700	Q9H0M5	742 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	LIN7B	Q9HAP6	207 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	CRLF2	Q9HC73	371 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	MOV10	Q9HCE1	1003 aa	Known RBP	11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	IARS2	Q9NSE4	1012 aa	Known RBP	11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	ASNSD1	Q9NWL6	643 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	RAB20	Q9NX57	234 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	STMN3	Q9NZ72	180 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	CLEC1B	Q9P126	229 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	TAGLN3	Q9UI15	199 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	TDRKH	Q9Y2W6	561 aa	Known RBP	11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	MED16	Q9Y2X0	877 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	CBY1	Q9Y3M2	126 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	STARD13	Q9Y3M8	1113 aa		11.78	□□□□□ -0.52
BRCA1-222	ENST00000493919	OR6C75	A6NL08	312 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	SOBP	A7XYQ1	873 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	KCNJ18	B7U540	433 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	POLR1C	O15160	346 aa	Predicted RBP	11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	RFPL2	O75678	378 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	ALX3	O95076	343 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	TGDS	O95455	350 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	PPM1F	P49593	454 aa	Predicted RBP	11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	CDH8	P55286	799 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	TSPY1	Q01534	308 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	OCRL	Q01968	901 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	KCNC3	Q14003	757 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	KCNJ12	Q14500	433 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	SLC39A12	Q504Y0	691 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	RARS2	Q5T160	578 aa	Known RBP	11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	ANKRD54	Q6NXT1	300 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	TMC5	Q6UXY8	1006 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	OR6B3	Q8NGW1	331 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	OR6S1	Q8NH40	331 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	SLC7A14	Q8TBB6	771 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	KBTBD7	Q8WVZ9	684 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	RUNDC3B	Q96NL0	473 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	NUDCD1	Q96RS6	583 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	TM9SF2	Q99805	663 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	USB1	Q9BQ65	265 aa	Known RBP	11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	RTP3	Q9BQQ7	232 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	NIF3L1	Q9GZT8	377 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	VRTN	Q9H8Y1	702 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	MARCH7	Q9H992	704 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	APOBEC3G	Q9HC16	384 aa	Known RBP	11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	MRPL40	Q9NQ50	206 aa	Known RBP	11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	DZANK1	Q9NVP4	752 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	DTL	Q9NZJ0	730 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919	FBXW11	Q9UKB1	542 aa		11.77	□□□□□ -0.53
BRCA1-222	ENST00000493919		A8MX80	341 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919		H3BUI4	141 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	CACNB4	O00305	520 aa	Predicted RBP	11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	PRRG1	O14668	218 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	ARHGAP6	O43182	974 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	SLC7A4	O43246	635 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	TBC1D4	O60343	1298 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	C8A	P07357	584 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	POU2F1	P14859	743 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	TMEM11	P17152	192 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	HOXC12	P31275	282 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	SOX5	P35711	763 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	ASPA	P45381	313 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	LHX1	P48742	406 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	HADHB	P55084	474 aa	Known RBP	11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	PTK2B	Q14289	1009 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	CCDC142	Q17RM4	750 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	SPRED3	Q2MJR0	410 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	TPGS2	Q68CL5	300 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	RNF19B	Q6ZMZ0	732 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	PEX26	Q7Z412	305 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	CPLX4	Q7Z7G2	160 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	IPMK	Q8NFU5	416 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	OR6P1	Q8NGX9	317 aa		11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	DGCR14	Q96DF8	476 aa	Known RBP	11.76	□□□□□ -0.53
BRCA1-222	ENST00000493919	WAC	Q9BTA9	647 aa		11.76	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms