RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 RTL10Q7L3V2 364 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 CHST3Q7LGC8 479 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 CCDC186Q7Z3E2 898 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 SFTPA1Q8IWL2 248 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 LNX2Q8N448 690 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 PBKQ96KB5 322 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 FIZ1Q96SL8 496 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 CITED2Q99967 270 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 TUBB6Q9BUF5 446 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 THUMPD3Q9BV44 507 aaKnown RBP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 IFT27Q9BW83 186 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 CCDC106Q9BWC9 280 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 KLC2Q9H0B6 622 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 PLK3Q9H4B4 646 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 CXorf56Q9H5V9 222 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 Q9N2J8 555 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 SETD4Q9NVD3 440 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 SELENONQ9NZV5 590 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 SEC63Q9UGP8 760 aaKnown RBP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 FAM90A8PA6NJQ4 464 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 CDRT15L2A8MXV6 281 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 USP17L23D6RBM5 183 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 PSMA7O14818 248 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 NDUFS3O75489 264 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 NKX2-2O95096 273 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 HLA-DQA2P01906 255 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 FAM90A13PP0C7W8 464 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 FAM90A24PP0C7X0 464 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 TGM2P21980 687 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 HDAC4P56524 1084 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 YWHAZP63104 245 aaKnown RBP4.86□□□□□ -1.63
VPS13A-212ENST00000493341 ZBTB16Q05516 673 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 DMWDQ09019 674 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 RNPS1Q15287 305 aaKnown RBP4.86□□□□□ -1.63
VPS13A-212ENST00000493341 MMEL1Q495T6 779 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 HMBOX1Q6NT76 420 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 CPLX2Q6PUV4 134 aaKnown RBP4.86□□□□□ -1.63
VPS13A-212ENST00000493341 DHRS13Q6UX07 377 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 KLBQ86Z14 1044 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 FAM185AQ8N0U4 392 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 TMCO5AQ8N6Q1 288 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 FEZF2Q8TBJ5 459 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 DUSP19Q8WTR2 217 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 RSPH1Q8WYR4 309 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 IP6K1Q92551 441 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 TMCO6Q96DC7 493 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 FER1L6-AS2Q96M78 137 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 DGAT2Q96PD7 388 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 BBS4Q96RK4 519 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 MMS19Q96T76 1030 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 C2orf40Q9H1Z8 148 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 HRH4Q9H3N8 390 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 RANGRFQ9HD47 186 aaPredicted RBP4.86□□□□□ -1.63
VPS13A-212ENST00000493341 PFDN4Q9NQP4 134 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 DTX4Q9Y2E6 619 aa4.86□□□□□ -1.63
VPS13A-212ENST00000493341 PI4K2BG5E9Z4 385 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 SCAMP1O15126 338 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 ADAMDEC1O15204 470 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 PEX1O43933 1283 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 ITGAMP11215 1152 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 NDUFB7P17568 137 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 CLK1P49759 484 aaKnown RBP4.85□□□□□ -1.63
VPS13A-212ENST00000493341 ZNF84P51523 738 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 ARSFP54793 590 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 GUCY1B3Q02153 619 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 TAP1Q03518 808 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 OLIG2Q13516 323 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 E2F5Q15329 346 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 PKN1Q16512 942 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 RPE65Q16518 533 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 ODF2Q5BJF6 829 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 LAIR1Q6GTX8 287 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 TRAT1Q6PIZ9 186 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 GLB1LQ6UWU2 654 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 RANBP10Q6VN20 620 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 RAPH1Q70E73 1250 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 PTERQ96BW5 349 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 ZNF347Q96SE7 839 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 GAD1Q99259 594 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 FAM129AQ9BZQ8 928 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 OSGEPL1Q9H4B0 414 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 ST6GALNAC4Q9H4F1 302 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 ASAH2Q9NR71 780 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 DLL3Q9NYJ7 618 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 COQ3Q9NZJ6 369 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 SH3BP4Q9P0V3 963 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 ADAMTS5Q9UNA0 930 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 ICKQ9UPZ9 632 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.85□□□□□ -1.63
VPS13A-212ENST00000493341 AAR2Q9Y312 384 aaKnown RBP4.85□□□□□ -1.63
VPS13A-212ENST00000493341 WDR27A2RRH5 827 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 GTPBP10A4D1E9 387 aaKnown RBP4.85□□□□□ -1.63
VPS13A-212ENST00000493341 A6NL46 340 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 LPXNO60711 386 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 SLC25A12O75746 678 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 FTCDO95954 541 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 ENO1P06733 434 aaKnown RBP4.85□□□□□ -1.63
VPS13A-212ENST00000493341 HEXAP06865 529 aa4.85□□□□□ -1.63
VPS13A-212ENST00000493341 SRPRAP08240 638 aaKnown RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms