RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 ARHGAP42A6NI28 874 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 PRAMEF26H0Y7S4 382 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 RNF103O00237 685 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 KCNK3O14649 394 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 WNT9AO14904 365 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 YKT6O15498 198 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 POP4O95707 220 aaKnown RBP15.33■□□□□ 0.04
USP39-217ENST00000491659 TPM1P09493 284 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 RHOAP61586 193 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 INO80DQ53TQ3 878 aaPredicted RBP15.33■□□□□ 0.04
USP39-217ENST00000491659 ATXN7L2Q5T6C5 722 aaPredicted RBP15.33■□□□□ 0.04
USP39-217ENST00000491659 SPECC1LQ69YQ0 1117 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 KIAA1161Q6NSJ0 714 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 ALKBH5Q6P6C2 394 aaKnown RBP15.33■□□□□ 0.04
USP39-217ENST00000491659 PARS2Q7L3T8 475 aaKnown RBP15.33■□□□□ 0.04
USP39-217ENST00000491659 OXR1Q8N573 874 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 MFSD2AQ8NA29 543 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 RNF214Q8ND24 703 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 CELF6Q96J87 481 aaKnown RBP15.33■□□□□ 0.04
USP39-217ENST00000491659 NUP85Q9BW27 656 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 KLC2Q9H0B6 622 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 ZWILCHQ9H900 591 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 UBA2Q9UBT2 640 aaPredicted RBP15.33■□□□□ 0.04
USP39-217ENST00000491659 IP6K2Q9UHH9 426 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 ANAPC7Q9UJX3 599 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 PCOLCE2Q9UKZ9 415 aa15.33■□□□□ 0.04
USP39-217ENST00000491659 PCNX2A6NKB5 2137 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 A0A1B0GTQ1 180 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 H3BRJ5 948 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 TLR4O00206 839 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 PCDHGA12O60330 932 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 TRIM16O95361 564 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 CYP1A2P05177 515 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 UGT2B4P06133 528 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 PRLRP16471 622 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 AKT2P31751 481 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 GKP32189 559 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 ARL4AP40617 200 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 GRK6P43250 576 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 ARRB1P49407 418 aaPredicted RBP15.32■□□□□ 0.04
USP39-217ENST00000491659 NXPH1P58417 271 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 FAM193AP78312 1265 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 IL9RQ01113 521 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 OVGP1Q12889 678 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 MYLK3Q32MK0 819 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 ZNF805Q5CZA5 627 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 CYP4V2Q6ZWL3 525 aaPredicted RBP15.32■□□□□ 0.04
USP39-217ENST00000491659 IQCHQ86VS3 1027 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 ZSCAN30Q86W11 494 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 RHBDD1Q8TEB9 315 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 RAB7BQ96AH8 199 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 CNTNAP3BQ96NU0 1288 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 ELF4Q99607 663 aaPredicted RBP15.32■□□□□ 0.04
USP39-217ENST00000491659 CDC6Q99741 560 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 MYOCQ99972 504 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 CNTNAP3Q9BZ76 1288 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 DEF6Q9H4E7 631 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 LRRC19Q9H756 370 aa15.32■□□□□ 0.04
USP39-217ENST00000491659 ANKRD36A6QL64 1941 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 TRPM6Q9BX84 2022 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 C16orf96A6NNT2 1141 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 SLC31A1O15431 190 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 AP1G1O43747 822 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 PRAMEF11O60813 436 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 CBFA2T3O75081 653 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 ERCC2P18074 760 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 HNRNPA2B1P22626 353 aaKnown RBP15.31■□□□□ 0.04
USP39-217ENST00000491659 HNRNPH3P31942 346 aaKnown RBP15.31■□□□□ 0.04
USP39-217ENST00000491659 EIF4A3P38919 411 aaKnown RBP15.31■□□□□ 0.04
USP39-217ENST00000491659 HCAR3P49019 387 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 RPS21P63220 83 aaKnown RBP15.31■□□□□ 0.04
USP39-217ENST00000491659 DPYSL2Q16555 572 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 TSR1Q2NL82 804 aaKnown RBP15.31■□□□□ 0.04
USP39-217ENST00000491659 SMTNL2Q2TAL5 461 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 ZNF284Q2VY69 593 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 BOLA3Q53S33 107 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 SEL1L3Q68CR1 1132 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 GDPD4Q6W3E5 623 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 DBX2Q6ZNG2 339 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 NIPA2Q8N8Q9 360 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 HSPH1Q92598 858 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 KLK6Q92876 244 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 ARHGEF26Q96DR7 871 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 FEM1CQ96JP0 617 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 KLHL32Q96NJ5 620 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 SLC39A8Q9C0K1 460 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 ERVMER34-1Q9H9K5 563 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 SP110Q9HB58 689 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 PDFQ9HBH1 243 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.31■□□□□ 0.04
USP39-217ENST00000491659 ZNHIT6Q9NWK9 470 aaKnown RBP15.31■□□□□ 0.04
USP39-217ENST00000491659 FADS3Q9Y5Q0 445 aa15.31■□□□□ 0.04
USP39-217ENST00000491659 COL5A1P20908 1838 aaPredicted RBP15.31■□□□□ 0.04
USP39-217ENST00000491659 MYO1FO00160 1098 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 DFFAO00273 331 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 NEMP1O14524 444 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 TSPAN6O43657 245 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 FTH1P19P0C7X4 201 aa15.3■□□□□ 0.04
USP39-217ENST00000491659 PAPOLAP51003 745 aaKnown RBP15.3■□□□□ 0.04
USP39-217ENST00000491659 MAPK8IP2Q13387 824 aaPredicted RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms