RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 ARRDC3Q96B67 414 aa17.62■□□□□ 0.41
MDC1-206ENST00000489540 ZNF599Q96NL3 588 aa17.62■□□□□ 0.41
MDC1-206ENST00000489540 GON4LQ3T8J9 2241 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 C10orf142B7Z368 130 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 IGHV4-34P06331 123 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 NUDT1P36639 197 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 ID4P47928 161 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 NEK3P51956 506 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 ZNF805Q5CZA5 627 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 ATXN7L2Q5T6C5 722 aaPredicted RBP17.61■□□□□ 0.41
MDC1-206ENST00000489540 PIP5KL1Q5T9C9 394 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 TMCO4Q5TGY1 634 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 NEK5Q6P3R8 708 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 FBXL19Q6PCT2 694 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 RAD9BQ6WBX8 426 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 VSIG1Q86XK7 387 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 RHOT1Q8IXI2 618 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 OR6K2Q8NGY2 324 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 PCDH19Q8TAB3 1148 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 C1orf216Q8TAB5 229 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 FAF2Q96CS3 445 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 RMDN1Q96DB5 314 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 EDEM2Q9BV94 578 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 CPEB1Q9BZB8 566 aaKnown RBP17.61■□□□□ 0.41
MDC1-206ENST00000489540 PREBQ9HCU5 417 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 RXFP3Q9NSD7 469 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 LHX3Q9UBR4 397 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 ALG6Q9Y672 507 aa17.61■□□□□ 0.41
MDC1-206ENST00000489540 ZNF292O60281 2723 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 A0A1W2PPC4 97 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 ZNF487B1APH4 448 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 RNF103O00237 685 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 ARHGAP33O14559 1287 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 SLC30A4O14863 429 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 SPOPO43791 374 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 ENGP17813 658 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 COMTP21964 271 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 CSNK1DP48730 415 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 RENBPP51606 427 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 GSDMDP57764 484 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 NSUN2Q08J23 767 aaKnown RBP eCLIP17.6■□□□□ 0.41
MDC1-206ENST00000489540 PUM1Q14671 1186 aaKnown RBP eCLIP17.6■□□□□ 0.412e-7■■■□□ 17
MDC1-206ENST00000489540 GRM3Q14832 879 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 PAFAH1B3Q15102 231 aaKnown RBP17.6■□□□□ 0.41
MDC1-206ENST00000489540 ODF2Q5BJF6 829 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 STPG1Q5TH74 334 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 GDPD4Q6W3E5 623 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 ARHGAP36Q6ZRI8 547 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 PRPF39Q86UA1 669 aaKnown RBP17.6■□□□□ 0.41
MDC1-206ENST00000489540 TP53INP2Q8IXH6 220 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 ZCCHC9Q8N567 271 aaKnown RBP17.6■□□□□ 0.41
MDC1-206ENST00000489540 NETO2Q8NC67 525 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 RAPGEF5Q92565 580 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 RTKNQ9BST9 563 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 ZDHHC5Q9C0B5 715 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 KLHL11Q9NVR0 708 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 DDX56Q9NY93 547 aaKnown RBP17.6■□□□□ 0.41
MDC1-206ENST00000489540 DLL3Q9NYJ7 618 aa17.6■□□□□ 0.41
MDC1-206ENST00000489540 LRRD1A4D1F6 860 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 C16orf96A6NNT2 1141 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 BTNL10A8MVZ5 291 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 LATO43561 262 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 BUB1BO60566 1050 aaPredicted RBP17.59■□□□□ 0.41
MDC1-206ENST00000489540 GKP32189 559 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 AFF3P51826 1226 aaKnown RBP17.59■□□□□ 0.41
MDC1-206ENST00000489540 ATXN3P54252 364 aaPredicted RBP17.59■□□□□ 0.41
MDC1-206ENST00000489540 TAS2R38P59533 333 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 LBRQ14739 615 aaKnown RBP17.59■□□□□ 0.41
MDC1-206ENST00000489540 TEAD4Q15561 434 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 TRIM69Q86WT6 500 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 TXLNBQ8N3L3 684 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 ATPAF2Q8N5M1 289 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 HCAR2Q8TDS4 363 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 NSMCE1Q8WV22 266 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 RAB7BQ96AH8 199 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 RNF157Q96PX1 679 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 ORAI3Q9BRQ5 295 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 CINPQ9BW66 212 aaPredicted RBP17.59■□□□□ 0.41
MDC1-206ENST00000489540 MAK16Q9BXY0 300 aaKnown RBP17.59■□□□□ 0.41
MDC1-206ENST00000489540 TMEM9BQ9NQ34 198 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 SEPT3Q9UH03 358 aa17.59■□□□□ 0.41
MDC1-206ENST00000489540 MAFKO60675 156 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 UGT2B4P06133 528 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 ADRB3P13945 408 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 RACK1P63244 317 aaKnown RBP17.58■□□□□ 0.41
MDC1-206ENST00000489540 NCBP2-AS2Q69YL0 99 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 C11orf63Q6NUN7 778 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 TMEM139Q8IV31 216 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 BBS5Q8N3I7 341 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 TSEN2Q8NCE0 465 aaKnown RBP17.58■□□□□ 0.41
MDC1-206ENST00000489540 SKA1Q96BD8 255 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 KLHL32Q96NJ5 620 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 PSKH2Q96QS6 385 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 TUBGCP5Q96RT8 1024 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 TM9SF3Q9HD45 589 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 DKK3Q9UBP4 350 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 TFR2Q9UP52 801 aa17.58■□□□□ 0.41
MDC1-206ENST00000489540 CHD5Q8TDI0 1954 aa17.58■□□□□ 0.4
MDC1-206ENST00000489540 C4orf47A7E2U8 309 aa17.57■□□□□ 0.4
MDC1-206ENST00000489540 CDX4O14627 284 aaPredicted RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms