RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 RFWD2Q8NHY2 731 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 LRRC8CQ8TDW0 803 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 FATE1Q969F0 183 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 FCRL5Q96RD9 977 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 KLF16Q9BXK1 252 aaPredicted RBP12.35□□□□□ -0.43
HDAC6-230ENST00000488543 IGFLR1Q9H665 355 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 MOCS1Q9NZB8 636 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 H0Y3Z8 333 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 UGT1A9O60656 530 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 FAM155BO75949 473 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 ALDH1A2O94788 518 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 UNC5CO95185 931 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 GM2AP17900 193 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 MTA1Q13330 715 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 PABPC1LQ4VXU2 614 aaKnown RBP12.34□□□□□ -0.43
HDAC6-230ENST00000488543 UNC5BQ8IZJ1 945 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 ELMOD1Q8N336 334 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 PPM1NQ8N819 430 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 VN1R2Q8NFZ6 395 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 SPATA22Q8NHS9 363 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 ADAMTS19Q8TE59 1207 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 RPRD1AQ96P16 312 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-230ENST00000488543 SLC46A2Q9BY10 475 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 UGT1A7Q9HAW7 530 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 UGT1A10Q9HAW8 530 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 UGT1A8Q9HAW9 530 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 ASAH2Q9NR71 780 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 UBP1Q9NZI7 540 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 SENP1Q9P0U3 644 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 CDH22Q9UJ99 828 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 MTCL1Q9Y4B5 1905 aaKnown RBP12.34□□□□□ -0.43
HDAC6-230ENST00000488543 J3KR12 359 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 PRPF4O43172 522 aaKnown RBP eCLIP12.34□□□□□ -0.43
HDAC6-230ENST00000488543 RHOP08100 348 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 T-ENOLP0DO92 83 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 ALADP13716 330 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 PGAM1P18669 254 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 CORO1AP31146 461 aaKnown RBP12.34□□□□□ -0.43
HDAC6-230ENST00000488543 PPP3CCP48454 512 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 SMAD3P84022 425 aaKnown RBP12.34□□□□□ -0.43
HDAC6-230ENST00000488543 RIPK1Q13546 671 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 RAB30Q15771 203 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 TMC5Q6UXY8 1006 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 CHRDL2Q6WN34 429 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 CYS1Q717R9 158 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 GRASPQ7Z6J2 395 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-230ENST00000488543 LGI2Q8N0V4 545 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 TTC8Q8TAM2 541 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 PTPRN2Q92932 1015 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 PLD4Q96BZ4 506 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 FAM167BQ9BTA0 163 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 APOL5Q9BWW9 433 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 FAM117AQ9C073 453 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 LRRC40Q9H9A6 602 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 EBF2Q9HAK2 575 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 RBM22Q9NW64 420 aaKnown RBP eCLIP12.34□□□□□ -0.43
HDAC6-230ENST00000488543 CPQQ9Y646 472 aa12.34□□□□□ -0.43
HDAC6-230ENST00000488543 TYROBPO43914 113 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 EDF1O60869 148 aaKnown RBP12.33□□□□□ -0.44
HDAC6-230ENST00000488543 MOSPD3O75425 235 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 CKMP06732 381 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 HARS2P49590 506 aaKnown RBP12.33□□□□□ -0.44
HDAC6-230ENST00000488543 CBX2Q14781 532 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-230ENST00000488543 SLC26A11Q86WA9 606 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 SHKBP1Q8TBC3 707 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 C10orf82Q8WW14 230 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 MRPS31Q92665 395 aaKnown RBP12.33□□□□□ -0.44
HDAC6-230ENST00000488543 ZNF75CPQ92670 426 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-230ENST00000488543 ZNF707Q96C28 371 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-230ENST00000488543 PRICKLE1Q96MT3 831 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-230ENST00000488543 APOL2Q9BQE5 337 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 ZNF180Q9UJW8 692 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 AGO1Q9UL18 857 aaKnown RBP12.33□□□□□ -0.44
HDAC6-230ENST00000488543 TRIOBPQ9H2D6 2365 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 MIA3Q5JRA6 1907 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 F5H5T6 163 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 PSMD3O43242 534 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 TSPAN3O60637 253 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 INHBAP08476 426 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 PTPN2P17706 415 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 MAPKAPK2P49137 400 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 SGSHP51688 502 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 NIPAL4Q0D2K0 466 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 PRPSAP1Q14558 356 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 CRYMQ14894 314 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 TEAD2Q15562 447 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 PDK4Q16654 411 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 TAF1BQ53T94 588 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-230ENST00000488543 CASC4Q6P4E1 433 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 MTDHQ86UE4 582 aaKnown RBP12.33□□□□□ -0.44
HDAC6-230ENST00000488543 LRRC6Q86X45 466 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 CCNJLQ8IV13 435 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 TCP10LQ8TDR4 215 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 AZIN2Q96A70 460 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 TIFAQ96CG3 184 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 FCRL3Q96P31 734 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-230ENST00000488543 LRRC37BQ96QE4 947 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 SSU72Q9NP77 194 aaKnown RBP12.33□□□□□ -0.44
HDAC6-230ENST00000488543 DONSONQ9NYP3 566 aa12.33□□□□□ -0.44
HDAC6-230ENST00000488543 CCL26Q9Y258 94 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms