RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 GDF15Q99988 308 aa9.57□□□□□ -0.88
SF3B1-211ENST00000487698 FEM1AQ9BSK4 669 aa9.57□□□□□ -0.88
SF3B1-211ENST00000487698 LMAN2LQ9H0V9 348 aa9.57□□□□□ -0.88
SF3B1-211ENST00000487698 MUC3BQ9H195 1237 aa9.57□□□□□ -0.88
SF3B1-211ENST00000487698 CERS4Q9HA82 394 aa9.57□□□□□ -0.88
SF3B1-211ENST00000487698 UGT1A7Q9HAW7 530 aa9.57□□□□□ -0.88
SF3B1-211ENST00000487698 UGT1A10Q9HAW8 530 aa9.57□□□□□ -0.88
SF3B1-211ENST00000487698 UGT1A8Q9HAW9 530 aa9.57□□□□□ -0.88
SF3B1-211ENST00000487698 MRM3Q9HC36 420 aaKnown RBP9.57□□□□□ -0.88
SF3B1-211ENST00000487698 SSU72Q9NP77 194 aaKnown RBP9.57□□□□□ -0.88
SF3B1-211ENST00000487698 SEPT3Q9UH03 358 aa9.57□□□□□ -0.88
SF3B1-211ENST00000487698 ZMYM5Q9UJ78 669 aa9.57□□□□□ -0.88
SF3B1-211ENST00000487698 IKBKGQ9Y6K9 419 aa9.57□□□□□ -0.88
SF3B1-211ENST00000487698 FAM169AQ9Y6X4 670 aa9.57□□□□□ -0.88
SF3B1-211ENST00000487698 KIF26AQ9ULI4 1882 aaPredicted RBP9.57□□□□□ -0.88
SF3B1-211ENST00000487698 IQANK1A0A1B0GTG1 560 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 CCDC195A0A1B0GUA6 201 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 LOC285095A0A1B0GVY8 99 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 A0A1W2PPM1 405 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 CBX4O00257 560 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 PRPF4O43172 522 aaKnown RBP eCLIP9.56□□□□□ -0.88
SF3B1-211ENST00000487698 ATP9BO43861 1147 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 MZF1P28698 734 aaPredicted RBP9.56□□□□□ -0.88
SF3B1-211ENST00000487698 SLC18A1P54219 525 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 ITKQ08881 620 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 MGAT5Q09328 741 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 USP4Q13107 963 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 CDH18Q13634 790 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 KCNC3Q14003 757 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 ZNF77Q15935 545 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 MPPE1Q53F39 396 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 PCID2Q5JVF3 399 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 ZNF697Q5TEC3 545 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 ELMSAN1Q6PJG2 1045 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 CES3Q6UWW8 571 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 GRASPQ7Z6J2 395 aaPredicted RBP9.56□□□□□ -0.88
SF3B1-211ENST00000487698 RBM23Q86U06 439 aaKnown RBP9.56□□□□□ -0.88
SF3B1-211ENST00000487698 MFN1Q8IWA4 741 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 BBS5Q8N3I7 341 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 DCAF4L2Q8NA75 395 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 PTCD2Q8WV60 388 aaKnown RBP9.56□□□□□ -0.88
SF3B1-211ENST00000487698 MFSD3Q96ES6 412 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 FEM1CQ96JP0 617 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 NKX2-4Q9H2Z4 354 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 CHRAC1Q9NRG0 131 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 TDP1Q9NUW8 608 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 PRKAG3Q9UGI9 489 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 PRRC2BQ5JSZ5 2229 aaKnown RBP9.56□□□□□ -0.88
SF3B1-211ENST00000487698 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.56□□□□□ -0.88
SF3B1-211ENST00000487698 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.56□□□□□ -0.88
SF3B1-211ENST00000487698 TTC24A2A3L6 582 aaPredicted RBP9.56□□□□□ -0.88
SF3B1-211ENST00000487698 HMX2A2RU54 273 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 EPOPA6NHQ4 379 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 TYROBPO43914 113 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 SNAP91O60641 907 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 ATXN1LP0C7T5 689 aaKnown RBP9.56□□□□□ -0.88
SF3B1-211ENST00000487698 CEBPBP17676 345 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 CSKP41240 450 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 RGRP47804 291 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 PPARDQ03181 441 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 POU6F1Q14863 301 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 CYTH1Q15438 398 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 SLC1A5Q15758 541 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 RAB30Q15771 203 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 PCSK7Q16549 785 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 FYB2Q5VWT5 728 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 PPP2R2DQ66LE6 453 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 PKN3Q6P5Z2 889 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 SH2D5Q6ZV89 423 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 TTC16Q8NEE8 873 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 VN1R2Q8NFZ6 395 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 GDPD5Q8WTR4 605 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 DDI1Q8WTU0 396 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 CDKL2Q92772 493 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 LMLNQ96KR4 655 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 NSMCE3Q96MG7 304 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 CINPQ9BW66 212 aaPredicted RBP9.56□□□□□ -0.88
SF3B1-211ENST00000487698 HAUS2Q9NVX0 235 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 SLC17A6Q9P2U8 582 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 VPS51Q9UID3 782 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 CLEC4EQ9ULY5 219 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 TCAF1Q9Y4C2 921 aa9.56□□□□□ -0.88
SF3B1-211ENST00000487698 ZNF197O14709 1029 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 PENKP01210 267 aaPredicted RBP9.55□□□□□ -0.88
SF3B1-211ENST00000487698 EPOP01588 193 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 KRT4P19013 534 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 NMBRP28336 390 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 NRIP1P48552 1158 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 SERPINB9P50453 376 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 INO80DQ53TQ3 878 aaPredicted RBP9.55□□□□□ -0.88
SF3B1-211ENST00000487698 C4orf33Q8N1A6 199 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 PPHLN1Q8NEY8 458 aaKnown RBP9.55□□□□□ -0.88
SF3B1-211ENST00000487698 FIBINQ8TAL6 211 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 DENND1AQ8TEH3 1009 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 BHMTQ93088 406 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 ZSWIM3Q96MP5 696 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 ZNF778Q96MU6 729 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 TRIB3Q96RU7 358 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 RANBP9Q96S59 729 aa9.55□□□□□ -0.88
SF3B1-211ENST00000487698 SMC6Q96SB8 1091 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms