RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 ARHGAP12Q8IWW6 846 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 CCDC13Q8IYE1 715 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 PQLC3Q8N755 202 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 OR2AP1Q8NGE2 309 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 OR52K2Q8NGK3 314 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 HCAR2Q8TDS4 363 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 FRS2Q8WU20 508 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 RAB7BQ96AH8 199 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 HDAC11Q96DB2 347 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 PBKQ96KB5 322 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 MRGPRX1Q96LB2 322 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 ZNF641Q96N77 438 aaPredicted RBP8.4□□□□□ -1.06
SF3A1-208ENST00000485618 PSKH2Q96QS6 385 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 TUBGCP5Q96RT8 1024 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 VAT1Q99536 393 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 CPEB1Q9BZB8 566 aaKnown RBP8.4□□□□□ -1.06
SF3A1-208ENST00000485618 KLC2Q9H0B6 622 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 PCED1AQ9H1Q7 454 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 KCNF1Q9H3M0 494 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 KDM4CQ9H3R0 1056 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 GOLPH3Q9H4A6 298 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 SGK2Q9HBY8 427 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 ZDHHC4Q9NPG8 344 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 ITM2CQ9NQX7 267 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 DTLQ9NZJ0 730 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 TRHDEQ9UKU6 1024 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 ZKSCAN5Q9Y2L8 839 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 MFHAS1Q9Y4C4 1052 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.4□□□□□ -1.06
SF3A1-208ENST00000485618 CAPN6Q9Y6Q1 641 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 NUP205Q92621 2012 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 GPR179Q6PRD1 2367 aa8.4□□□□□ -1.07
SF3A1-208ENST00000485618 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 CTAGE9A4FU28 777 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 LRRC72A6NJI9 287 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 H7C0C1 242 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 J3KR12 359 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 KPNA3O00505 521 aaPredicted RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 SMAD6O43541 496 aaKnown RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 MAFKO60675 156 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 PYGMP11217 842 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 TDGF1P13385 188 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 TCP1P17987 556 aaKnown RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 GABRG2P18507 467 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 NDUFV2P19404 249 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 KCNA4P22459 653 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 TGM1P22735 817 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 GLDCP23378 1020 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 SERPINA4P29622 427 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 NUDT1P36639 197 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 ATP5OP48047 213 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 FNTBP49356 437 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 CCNHP51946 323 aaPredicted RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 GNG11P61952 73 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 AP1S1P61966 158 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 RPS14P62263 151 aaKnown RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 GBE1Q04446 702 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 BCL2L1Q07817 233 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 PPIDQ08752 370 aaKnown RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 COL9A2Q14055 689 aaPredicted RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 CST6Q15828 149 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 ARTNQ5T4W7 220 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 CCDC70Q6NSX1 233 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 KIAA1211LQ6NV74 962 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 PKN3Q6P5Z2 889 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 FBXL19Q6PCT2 694 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 DARS2Q6PI48 645 aaKnown RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 Q6ZVU0 165 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 LPCAT2Q7L5N7 544 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 ZSCAN30Q86W11 494 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 CPNE8Q86YQ8 564 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 REXO1L1PQ8IX06 675 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 STK40Q8N2I9 435 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 TEX26Q8N6G2 289 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 NPWQ8N729 165 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 MDGA1Q8NFP4 955 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 OR2A12Q8NGT7 310 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 PIP4K2CQ8TBX8 421 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 NETO1Q8TDF5 533 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 GAB3Q8WWW8 586 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 PTPRN2Q92932 1015 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 FOXJ1Q92949 421 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 MYO19Q96H55 970 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 POLR1EQ9GZS1 481 aaKnown RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 BTBD1Q9H0C5 482 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 TNKS2Q9H2K2 1166 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 PABPC3Q9H361 631 aaKnown RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 SCUBE2Q9NQ36 999 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 KCND1Q9NSA2 647 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 ETNK2Q9NVF9 386 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 RBM22Q9NW64 420 aaKnown RBP eCLIP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 FBXL12Q9NXK8 326 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 FEZ2Q9UHY8 353 aaPredicted RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 HCN2Q9UL51 889 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 PPM1HQ9ULR3 514 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 FZD4Q9ULV1 537 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 FCF1Q9Y324 198 aaKnown RBP8.39□□□□□ -1.07
SF3A1-208ENST00000485618 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.39□□□□□ -1.075e-15■■■■□ 19.3
SF3A1-208ENST00000485618 WDR87Q6ZQQ6 2873 aa8.39□□□□□ -1.07
SF3A1-208ENST00000485618 GOLGA6L10A0A0M3HER8 536 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms