RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 NFU1Q9UMS0 254 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 CNTN6Q9UQ52 1028 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 CEP83Q9Y592 693 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 PCDHGB2Q9Y5G2 931 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 A0A1B0GVM2 712 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 NPIPB13A6NJU9 1138 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 NPIPB5A8MRT5 1133 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 NPIPB4C9JG80 1138 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 F5H423 210 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 FCGR2AP12318 317 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 NPPBP16860 134 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 EEF1GP26641 437 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 DCTDP32321 178 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 PPM1AP35813 382 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 SF3A3Q12874 501 aaKnown RBP eCLIP3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 FAM83BQ5T0W9 1011 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 GORABQ5T7V8 394 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 CERS3Q8IU89 383 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 RBFAQ8N0V3 343 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 ZNF441Q8N8Z8 693 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 POF1BQ8WVV4 589 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 FAR1Q8WVX9 515 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 WDR12Q9GZL7 423 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 NPFFR1Q9GZQ6 430 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 ARFGAP3Q9NP61 516 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 RCE1Q9Y256 329 aa3.43□□□□□ -1.86
CCDC88A-212ENST00000474059 C17orf102A2RUQ5 167 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 P2RY10O00398 339 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 CLGNO14967 610 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 EDIL3O43854 480 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 LYL1P12980 280 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 SSTR2P30874 369 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 TRAPPC10P48553 1259 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 HSPA7P48741 367 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 CLCNKBP51801 687 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 RCAN1P53805 252 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 MPEG1Q2M385 716 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 GRAMD1BQ3KR37 738 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 TRIM60Q495X7 471 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 ARL6IP4Q66PJ3 421 aaKnown RBP3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 RINT1Q6NUQ1 792 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 MYLK4Q86YV6 388 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 EPHX4Q8IUS5 362 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 SECTM1Q8WVN6 248 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 CRB3Q9BUF7 120 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 LRCH1Q9Y2L9 728 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 NFS1Q9Y697 457 aa3.42□□□□□ -1.86
CCDC88A-212ENST00000474059 IGHV4OR15-8A0A075B7B6 117 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 GRM8O00222 908 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 RNMTO43148 476 aaKnown RBP3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 DNPH1O43598 174 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 PLA2G6O60733 806 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 TCEA3O75764 348 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 PMS2P2O95744 297 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 IGHV4-30-4P0DP06 118 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 AKT1P31749 480 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 TECP42680 631 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 ZNF132P52740 706 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 TNFAIP2Q03169 654 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 DHX8Q14562 1220 aaKnown RBP3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 KRT72Q14CN4 511 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 LCE3AQ5TA76 89 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 WDR5BQ86VZ2 330 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 PALB2Q86YC2 1186 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 SYTL1Q8IYJ3 562 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 OR1N1Q8NGS0 311 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 WDR60Q8WVS4 1066 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 USP13Q92995 863 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 ZNF566Q969W8 418 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 ZNF501Q96CX3 271 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 EPYCQ99645 322 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 PPCSQ9HAB8 311 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 ZFP57Q9NU63 452 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 PCDHA10Q9Y5I2 948 aa3.41□□□□□ -1.86
CCDC88A-212ENST00000474059 A0A087WV62 115 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 KDM4EB2RXH2 506 aaPredicted RBP3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 EYA2O00167 538 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 PIP5K1BO14986 540 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 ZNF500O60304 480 aaPredicted RBP3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 CYP21A2P08686 494 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 CKMT1AP12532 417 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 MARK3P27448 753 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 FMO4P31512 558 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 ERVK11-1P61568 191 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 RNASELQ05823 741 aaKnown RBP3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 CDK18Q07002 472 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 ZBTB17Q13105 803 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 TRIM14Q14142 442 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 BTBD16Q32M84 506 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 TUBB8Q3ZCM7 444 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 TYW3Q6IPR3 259 aaKnown RBP3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 UNQ6126/PRO20091Q6UXV3 157 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 SCN4BQ8IWT1 228 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 VPS52Q8N1B4 723 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 LRRC8CQ8TDW0 803 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 TMEM41AQ96HV5 264 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 TRMT61BQ9BVS5 477 aaKnown RBP3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 STK33Q9BYT3 514 aa3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 TP63Q9H3D4 680 aaPredicted RBP3.4□□□□□ -1.87
CCDC88A-212ENST00000474059 NOTCH2Q04721 2471 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms