RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 AASSQ9UDR5 926 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 MAN2B2Q9Y2E5 1009 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 H0YJX3 145 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 ELAVL2Q12926 359 aaKnown RBP13.44□□□□□ -0.26
COL6A3-209ENST00000472056 ITCHQ96J02 903 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 VPS4AQ9UN37 437 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 SLC22A1O15245 554 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 GRAP2O75791 330 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 LYNP07948 512 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 TXNP10599 105 aaKnown RBP13.44□□□□□ -0.26
COL6A3-209ENST00000472056 PEX6Q13608 980 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 CSHL1Q14406 222 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 LCN1P1Q5VSP4 162 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 NAT14Q8WUY8 206 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 YTHDF1Q9BYJ9 559 aaKnown RBP13.44□□□□□ -0.26
COL6A3-209ENST00000472056 GGA3Q9NZ52 723 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 BCS1LQ9Y276 419 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 CNTD1Q8N815 330 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 LBHD1Q9BQE6 289 aaPredicted RBP13.44□□□□□ -0.26
COL6A3-209ENST00000472056 ITGA10O75578 1167 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 ACAP2Q15057 778 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 MFSD7Q6UXD7 560 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 PCDHGB3Q9Y5G1 929 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 NUP205Q92621 2012 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 TULP2O00295 520 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 SIN3BO75182 1162 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 AIF1P55008 147 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 SRP54P61011 504 aaKnown RBP13.43□□□□□ -0.26
COL6A3-209ENST00000472056 AP1S1P61966 158 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 FSCN1Q16658 493 aaKnown RBP13.43□□□□□ -0.26
COL6A3-209ENST00000472056 FBXO43Q4G163 708 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 ZNF571Q7Z3V5 609 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-209ENST00000472056 DNAJB8Q8NHS0 232 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 CCDC3Q9BQI4 270 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 LACRTQ9GZZ8 138 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 TSR3Q9UJK0 312 aaKnown RBP13.43□□□□□ -0.26
COL6A3-209ENST00000472056 RGS10O43665 173 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 CBX6O95503 412 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 ATP6V0D1P61421 351 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 PLCZ1Q86YW0 608 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 FAIM2Q9BWQ8 316 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 ACSS3Q9H6R3 686 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 TAS2R7Q9NYW3 318 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 RCOR3Q9P2K3 495 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-209ENST00000472056 ZBTB14O43829 449 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 IDH2P48735 452 aaKnown RBP13.43□□□□□ -0.26
COL6A3-209ENST00000472056 ALDH3A2P51648 485 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 FOXO4P98177 505 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 CBFBQ13951 182 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 DDI2Q5TDH0 399 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 OLFML2AQ68BL7 652 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 MPZL3Q6UWV2 235 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-209ENST00000472056 NIPA1Q7RTP0 329 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 SLCO6A1Q86UG4 719 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 SERPINB11Q96P15 392 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 BBS4Q96RK4 519 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 HGH1Q9BTY7 390 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 TLR8Q9NR97 1041 aaKnown RBP13.43□□□□□ -0.26
COL6A3-209ENST00000472056 SLC28A1O00337 649 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 TM7SF2O76062 418 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 COL6A2P12110 1019 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 GABRB2P47870 512 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 PSME3P61289 254 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 PPM1LQ5SGD2 360 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 SPATA19Q7Z5L4 167 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 POLR1DQ9Y2S0 133 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 ASXL3Q9C0F0 2248 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 A0A0A0MRY4 1105 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 LTA4HP09960 611 aaKnown RBP13.43□□□□□ -0.26
COL6A3-209ENST00000472056 TAF5Q15542 800 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 SLC47A2Q86VL8 602 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 SPATA13Q96N96 652 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 KCNH7Q9NS40 1196 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 CISHQ9NSE2 258 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 FGRP09769 529 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 ITIH5Q86UX2 942 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 KAT5Q92993 513 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 ITFG2Q969R8 447 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 CAB39LQ9H9S4 337 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 PAK6Q9NQU5 681 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-209ENST00000472056 TAS2R1Q9NYW7 299 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 DRD4P21917 467 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 PTPN11Q06124 597 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-209ENST00000472056 KCTD21Q4G0X4 260 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 ARHGAP36Q6ZRI8 547 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 MTSS1LQ765P7 747 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 ROPN1LQ96C74 230 aa13.43□□□□□ -0.26
COL6A3-209ENST00000472056 NRXN1Q9ULB1 1477 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 RPS6KA4O75676 772 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 STAU1O95793 577 aaKnown RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 PRLP01236 227 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 ITGB3P05106 788 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 CYP2A6P11509 494 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 RPA3P35244 121 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 EIF2S3LQ2VIR3 472 aaKnown RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 ATG4AQ8WYN0 398 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 TBL1YQ9BQ87 522 aa13.42□□□□□ -0.26
COL6A3-209ENST00000472056 DDX43Q9NXZ2 648 aaKnown RBP13.42□□□□□ -0.26
COL6A3-209ENST00000472056 KBTBD13C9JR72 458 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms