RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 POTEHQ6S545 545 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 RANBP10Q6VN20 620 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 TFAP2DQ7Z6R9 452 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 RTN4RL1Q86UN2 441 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 DEFB107AQ8IZN7 70 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 STYXQ8WUJ0 223 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 CCDC124Q96CT7 223 aaKnown RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 UROC1Q96N76 676 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 TSNARE1Q96NA8 513 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 ZIC5Q96T25 663 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 OMDQ99983 421 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 DRC3Q9H069 523 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 NOL6Q9H6R4 1146 aaKnown RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 NMRK2Q9NPI5 230 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 TCF7L2Q9NQB0 619 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 ENTPD7Q9NQZ7 604 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 XPR1Q9UBH6 696 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 IPO11Q9UI26 975 aaKnown RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 ZDHHC2Q9UIJ5 367 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 G3BP2Q9UN86 482 aaKnown RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 ACOT9Q9Y305 439 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 TARM1B6A8C7 271 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 DLX3O60479 287 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 H2AFYO75367 372 aaKnown RBP9.05□□□□□ -0.96
SYNE1-217ENST00000466159 CABYRO75952 493 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 APOA4P06727 396 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 COX4I1P13073 169 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 TFEBP19484 476 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 EPHA3P29320 983 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 GRK4P32298 578 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 SERPINB5P36952 375 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 RPL14P50914 215 aaKnown RBP9.05□□□□□ -0.96
SYNE1-217ENST00000466159 RAB10P61026 200 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 MAXP61244 160 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 ZNF470Q6ECI4 717 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 LRRC8EQ6NSJ5 796 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 LMNTD2Q8IXW0 634 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 PPFIBP2Q8ND30 876 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 GPR152Q8TDT2 470 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 UCMAQ8WVF2 138 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 FAM136AQ96C01 138 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 GPR78Q96P69 363 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 LENG8Q96PV6 779 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-217ENST00000466159 NUF2Q9BZD4 464 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 TREX1Q9NSU2 369 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 CDH22Q9UJ99 828 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 ANGPTL2Q9UKU9 493 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 NOD1Q9Y239 953 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 RAP2CQ9Y3L5 183 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 MIA3Q5JRA6 1907 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 TTC24A2A3L6 582 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-217ENST00000466159 J3KR12 359 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 MAP3K7O43318 606 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 GRID2O43424 1007 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 JUNP05412 331 aaKnown RBP9.05□□□□□ -0.96
SYNE1-217ENST00000466159 STMN1P16949 149 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 GLDCP23378 1020 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 HTR7P34969 479 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 NUMBP49757 651 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 WNT3AP56704 352 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 TAS2R39P59534 338 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 USP46P62068 366 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 AP2B1P63010 937 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 PRKCZQ05513 592 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 UGP2Q16851 508 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 LSM12Q3MHD2 195 aaKnown RBP9.05□□□□□ -0.96
SYNE1-217ENST00000466159 ZNF789Q5FWF6 425 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 FSCBQ5H9T9 825 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 TIGD7Q6NT04 549 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-217ENST00000466159 PGM2L1Q6PCE3 622 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 TMC7Q7Z402 723 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 HPS6Q86YV9 775 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 LSMEM2Q8N112 164 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 RDH11Q8TC12 318 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 ACTRT2Q8TDY3 377 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 PYDC1Q8WXC3 89 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 SGF29Q96ES7 293 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 ELMO2Q96JJ3 720 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 SERPINB11Q96P15 392 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 KLHL5Q96PQ7 755 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 MID2Q9UJV3 735 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 PCDHB8Q9UN66 801 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 SSX2IPQ9Y2D8 614 aa9.05□□□□□ -0.96
SYNE1-217ENST00000466159 LIN7AO14910 233 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 HDAC3O15379 428 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 CCNT2O60583 730 aaKnown RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 CNTN5O94779 1100 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 TBX18O95935 607 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 PEX11BO96011 259 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 RPLP2P05387 115 aaKnown RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 HAPLN1P10915 354 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 CAP1Q01518 475 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 ITKQ08881 620 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 IHHQ14623 411 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 TRIM71Q2Q1W2 868 aaKnown RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 ALFQ53S48 1182 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 CLLU1OSQ5K130 101 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 TCHHL1Q5QJ38 904 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-217ENST00000466159 TSTD2Q5T7W7 516 aa9.04□□□□□ -0.96
SYNE1-217ENST00000466159 METTL21CQ5VZV1 264 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms