RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 IFT43Q96FT9 208 aa23.17■■□□□ 1.3
PTPN4-207ENST00000460162 AGPAT1Q99943 283 aa23.17■■□□□ 1.3
PTPN4-207ENST00000460162 HSD3B7Q9H2F3 369 aa23.17■■□□□ 1.3
PTPN4-207ENST00000460162 CACNA1GO43497 2377 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 TCRBV5S1A1TA0A578 114 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 CCP110O43303 1012 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 CCDC172P0C7W6 258 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 ACP1P24666 158 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 ZNF143P52747 638 aaPredicted RBP23.16■■□□□ 1.3
PTPN4-207ENST00000460162 AIF1P55008 147 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 SNRPD1P62314 119 aaKnown RBP23.16■■□□□ 1.3
PTPN4-207ENST00000460162 HS1BP3Q53T59 392 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 CCDC183Q5T5S1 534 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 DCP2Q8IU60 420 aaKnown RBP23.16■■□□□ 1.3
PTPN4-207ENST00000460162 SLC22A18ASQ8N1D0 253 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 RYBPQ8N488 228 aaPredicted RBP23.16■■□□□ 1.3
PTPN4-207ENST00000460162 RTL3Q8N8U3 475 aaKnown RBP23.16■■□□□ 1.3
PTPN4-207ENST00000460162 NXPE2Q96DL1 559 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 FEM1CQ96JP0 617 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 OSBPL1AQ9BXW6 950 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 SLC17A9Q9BYT1 436 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 GPR27Q9NS67 375 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 RAXQ9Y2V3 346 aa23.16■■□□□ 1.3
PTPN4-207ENST00000460162 NBEAQ8NFP9 2946 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 TSPAN6O43657 245 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 FERP16591 822 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 DGKAP23743 735 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 CLDN2P57739 230 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 CYP4F3Q08477 520 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 ZNF211Q13398 564 aaPredicted RBP23.15■■□□□ 1.3
PTPN4-207ENST00000460162 ZNF805Q5CZA5 627 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 HES3Q5TGS1 186 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 PTAR1Q7Z6K3 402 aaPredicted RBP23.15■■□□□ 1.3
PTPN4-207ENST00000460162 OR6K2Q8NGY2 324 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 OR4C6Q8NH72 309 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 CASKIN2Q8WXE0 1202 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 MCEEQ96PE7 176 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 MAGEB5Q9BZ81 275 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 HS3ST3A1Q9Y663 406 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 CELSR3Q9NYQ7 3312 aa23.15■■□□□ 1.3
PTPN4-207ENST00000460162 KNTC1P50748 2209 aa23.14■■□□□ 1.3
PTPN4-207ENST00000460162 MYLKQ15746 1914 aa23.14■■□□□ 1.3
PTPN4-207ENST00000460162 KDELR3O43731 214 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 JUPP14923 745 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 DESP17661 470 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 EPHB2P29323 1055 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 ABL2P42684 1182 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 MAPK8IP2Q13387 824 aaPredicted RBP23.14■■□□□ 1.29
PTPN4-207ENST00000460162 FGL2Q14314 439 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 PPP1R15BQ5SWA1 713 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 PPP1R2P3Q6NXS1 205 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 SLC25A45Q8N413 288 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 DENND6BQ8NEG7 585 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 ARHGEF26Q96DR7 871 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 EPAS1Q99814 870 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 SCUBE2Q9NQ36 999 aa23.14■■□□□ 1.29
PTPN4-207ENST00000460162 TDRD6O60522 2096 aaKnown RBP23.13■■□□□ 1.29
PTPN4-207ENST00000460162 C16orf96A6NNT2 1141 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 KRIT1O00522 736 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 TRIM38O00635 465 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 SIGLEC6O43699 453 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 PIAS2O75928 621 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 TMCC1O94876 653 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 Q6ZSR6 202 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 PYROXD2Q8N2H3 581 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 AOPEPQ8N6M6 819 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 ASB12Q8WXK4 309 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 RFFLQ8WZ73 363 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 GDAP1L1Q96MZ0 367 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 CNPY3Q9BT09 278 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 CATSPERBQ9H7T0 1116 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 MYO6Q9UM54 1294 aa23.13■■□□□ 1.29
PTPN4-207ENST00000460162 POP4O95707 220 aaKnown RBP23.12■■□□□ 1.29
PTPN4-207ENST00000460162 UGT2B4P06133 528 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 ALPPL2P10696 532 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 ATP1A3P13637 1013 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 GKP32189 559 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 RABIFP47224 123 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 CLDN6P56747 220 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 YBEYP58557 167 aaPredicted RBP23.12■■□□□ 1.29
PTPN4-207ENST00000460162 RPL7AP62424 266 aaKnown RBP23.12■■□□□ 1.29
PTPN4-207ENST00000460162 TYRO3Q06418 890 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 PARP15Q460N3 678 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 INO80DQ53TQ3 878 aaPredicted RBP23.12■■□□□ 1.29
PTPN4-207ENST00000460162 SCYL2Q6P3W7 929 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 ZNF354CQ86Y25 554 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 MCOLN2Q8IZK6 566 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 CACTIN-AS1Q8N1I8 211 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 VOPP1Q96AW1 172 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 BMFQ96LC9 184 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 LENG8Q96PV6 779 aaPredicted RBP23.12■■□□□ 1.29
PTPN4-207ENST00000460162 C1QTNF2Q9BXJ5 285 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 NAT10Q9H0A0 1025 aaKnown RBP23.12■■□□□ 1.29
PTPN4-207ENST00000460162 NOL6Q9H6R4 1146 aaKnown RBP23.12■■□□□ 1.29
PTPN4-207ENST00000460162 UCKL1Q9NWZ5 548 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 FZD10Q9ULW2 581 aa23.12■■□□□ 1.29
PTPN4-207ENST00000460162 POM121BA6NF01 834 aa23.11■■□□□ 1.29
PTPN4-207ENST00000460162 WASH4PA8MWX3 477 aa23.11■■□□□ 1.29
PTPN4-207ENST00000460162 NEMP1O14524 444 aa23.11■■□□□ 1.29
PTPN4-207ENST00000460162 RAD51BO15315 384 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms