RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 PEBP4Q96S96 227 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 NCAPGQ9BPX3 1015 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 APOBEC2Q9Y235 224 aaKnown RBP21.58■■□□□ 1.05
HMGB3-205ENST00000455596 BTBD3Q9Y2F9 522 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 LUC7L2Q9Y383 392 aaKnown RBP21.58■■□□□ 1.05
HMGB3-205ENST00000455596 KRIT1O00522 736 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 SLC31A1O15431 190 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 YKT6O15498 198 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 HYAL3O43820 417 aaPredicted RBP21.57■■□□□ 1.04
HMGB3-205ENST00000455596 TMCC1O94876 653 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 POP4O95707 220 aaKnown RBP21.57■■□□□ 1.04
HMGB3-205ENST00000455596 TPM3P06753 285 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 FTH1P19P0C7X4 201 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 MIPP30301 263 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 SERINC3Q13530 473 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 ACAP1Q15027 740 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 CA9Q16790 459 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 ZNF284Q2VY69 593 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 INO80DQ53TQ3 878 aaPredicted RBP21.57■■□□□ 1.04
HMGB3-205ENST00000455596 PRAMEF14Q5SWL7 426 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 PARS2Q7L3T8 475 aaKnown RBP21.57■■□□□ 1.04
HMGB3-205ENST00000455596 PSTKQ8IV42 348 aaKnown RBP21.57■■□□□ 1.04
HMGB3-205ENST00000455596 OXR1Q8N573 874 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 KLK6Q92876 244 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 KLC2Q9H0B6 622 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 ERVMER34-1Q9H9K5 563 aa21.57■■□□□ 1.04
HMGB3-205ENST00000455596 TDRD6O60522 2096 aaKnown RBP21.57■■□□□ 1.04
HMGB3-205ENST00000455596 DAPK3O43293 454 aa21.56■■□□□ 1.04
HMGB3-205ENST00000455596 LRCH4O75427 683 aa21.56■■□□□ 1.04
HMGB3-205ENST00000455596 GYPCP04921 128 aa21.56■■□□□ 1.04
HMGB3-205ENST00000455596 GKP32189 559 aa21.56■■□□□ 1.04
HMGB3-205ENST00000455596 ARRB1P49407 418 aaPredicted RBP21.56■■□□□ 1.04
HMGB3-205ENST00000455596 NDST2P52849 883 aa21.56■■□□□ 1.04
HMGB3-205ENST00000455596 RAD51Q06609 339 aa21.56■■□□□ 1.04
HMGB3-205ENST00000455596 MYLK3Q32MK0 819 aa21.56■■□□□ 1.04
HMGB3-205ENST00000455596 ZNF805Q5CZA5 627 aa21.56■■□□□ 1.04
HMGB3-205ENST00000455596 KIAA1161Q6NSJ0 714 aa21.56■■□□□ 1.04
HMGB3-205ENST00000455596 GDAP1L1Q96MZ0 367 aa21.56■■□□□ 1.04
HMGB3-205ENST00000455596 KCTD15Q96SI1 283 aaPredicted RBP21.56■■□□□ 1.04
HMGB3-205ENST00000455596 OSBPL1AQ9BXW6 950 aa21.56■■□□□ 1.04
HMGB3-205ENST00000455596 ZFR2Q9UPR6 939 aaKnown RBP21.56■■□□□ 1.04
HMGB3-205ENST00000455596 NEUROG3Q9Y4Z2 214 aa21.56■■□□□ 1.04
HMGB3-205ENST00000455596 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.56■■□□□ 1.044e-8■□□□□ 11.1
HMGB3-205ENST00000455596 AP1G1O43747 822 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 IGSF6O95976 241 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 PRLRP16471 622 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 HNRNPA2B1P22626 353 aaKnown RBP21.55■■□□□ 1.04
HMGB3-205ENST00000455596 AKT2P31751 481 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 ZNF135P52742 658 aaPredicted RBP21.55■■□□□ 1.04
HMGB3-205ENST00000455596 RHOAP61586 193 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 NFKBIBQ15653 356 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 ATXN7L2Q5T6C5 722 aaPredicted RBP21.55■■□□□ 1.04
HMGB3-205ENST00000455596 CYP4V2Q6ZWL3 525 aaPredicted RBP21.55■■□□□ 1.04
HMGB3-205ENST00000455596 RAB44Q7Z6P3 723 aaPredicted RBP21.55■■□□□ 1.04
HMGB3-205ENST00000455596 SPATS2Q86XZ4 545 aaKnown RBP21.55■■□□□ 1.04
HMGB3-205ENST00000455596 CHCHD4Q8N4Q1 142 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 TMEM145Q8NBT3 493 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 ADAMTS14Q8WXS8 1223 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 RAB7BQ96AH8 199 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 KLHDC7BQ96G42 594 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 FEM1CQ96JP0 617 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 MYOCQ99972 504 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 XPO4Q9C0E2 1151 aaKnown RBP21.55■■□□□ 1.04
HMGB3-205ENST00000455596 LRRC19Q9H756 370 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 UBA2Q9UBT2 640 aaPredicted RBP21.55■■□□□ 1.04
HMGB3-205ENST00000455596 CA5BQ9Y2D0 317 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 FADS3Q9Y5Q0 445 aa21.55■■□□□ 1.04
HMGB3-205ENST00000455596 A0A087X0T9 212 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 C16orf96A6NNT2 1141 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 UGT2B4P06133 528 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 ITGAVP06756 1048 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 FAM228BP0C875 321 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 CASP14P31944 242 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 PCK1P35558 622 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 RPS21P63220 83 aaKnown RBP21.54■■□□□ 1.04
HMGB3-205ENST00000455596 SHBQ15464 509 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 TMEM259Q4ZIN3 620 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 PPP6R3Q5H9R7 873 aaPredicted RBP21.54■■□□□ 1.04
HMGB3-205ENST00000455596 SEL1L3Q68CR1 1132 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 RFX8Q6ZV50 586 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 ZSCAN30Q86W11 494 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 GATAD2AQ86YP4 633 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 CELF6Q96J87 481 aaKnown RBP21.54■■□□□ 1.04
HMGB3-205ENST00000455596 KLHL32Q96NJ5 620 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 THAP2Q9H0W7 228 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 LRRK1Q38SD2 2015 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 SHROOM3Q8TF72 1996 aa21.54■■□□□ 1.04
HMGB3-205ENST00000455596 PLXNB3Q9ULL4 1909 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 ARHGAP42A6NI28 874 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 TNFSF14O43557 240 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 ERCC2P18074 760 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 RXRGP48443 463 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 MAPK8IP2Q13387 824 aaPredicted RBP21.53■■□□□ 1.04
HMGB3-205ENST00000455596 PIGHQ14442 188 aaPredicted RBP21.53■■□□□ 1.04
HMGB3-205ENST00000455596 GDPD4Q6W3E5 623 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 SLCO6A1Q86UG4 719 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 PNPLA1Q8N8W4 532 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 NETO2Q8NC67 525 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 SAP25Q8TEE9 199 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 SLC17A9Q9BYT1 436 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms