RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 DIAPH3Q9NSV4 1193 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 RCE1Q9Y256 329 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 PSAT1Q9Y617 370 aa4.46□□□□□ -1.7
VPS29-202ENST00000447578 YTHDC2Q9H6S0 1430 aaKnown RBP4.46□□□□□ -1.7
VPS29-202ENST00000447578 PTPRMP28827 1452 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 ABCC11Q96J66 1382 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 SH2D7A6NKC9 451 aaPredicted RBP4.45□□□□□ -1.7
VPS29-202ENST00000447578 B4DLN1 442 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 M0QZQ0 153 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 NKX2-8O15522 239 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 AHCYL1O43865 530 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 DHX16O60231 1041 aaKnown RBP4.45□□□□□ -1.7
VPS29-202ENST00000447578 CHRM5P08912 532 aaPredicted RBP4.45□□□□□ -1.7
VPS29-202ENST00000447578 ACADMP11310 421 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 PRF1P14222 555 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 MAPK4P31152 587 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 RCAN1P53805 252 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 CDH15P55291 814 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 CUL4AQ13619 759 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 CBFBQ13951 182 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 TBCEQ15813 527 aaPredicted RBP4.45□□□□□ -1.7
VPS29-202ENST00000447578 MEX3CQ5U5Q3 659 aaKnown RBP4.45□□□□□ -1.7
VPS29-202ENST00000447578 SNX30Q5VWJ9 437 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 GRHL2Q6ISB3 625 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 KLHL24Q6TFL4 600 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 MRPL10Q7Z7H8 261 aaKnown RBP4.45□□□□□ -1.7
VPS29-202ENST00000447578 NFKBIDQ8NI38 313 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 SLC2A12Q8TD20 617 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 NPIPB3Q92617 1050 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 FRAT1Q92837 279 aaPredicted RBP4.45□□□□□ -1.7
VPS29-202ENST00000447578 RSPRY1Q96DX4 576 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 CD180Q99467 661 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 HERC2P3Q9BVR0 1158 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 PHF7Q9BWX1 381 aaPredicted RBP4.45□□□□□ -1.7
VPS29-202ENST00000447578 PDE11AQ9HCR9 933 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 PPP1R14DQ9NXH3 145 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 ALKBH4Q9NXW9 302 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 ASIC5Q9NY37 505 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 TAS2R10Q9NYW0 307 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 TBC1D29Q9UFV1 150 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 PIAS3Q9Y6X2 628 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 USP32Q8NFA0 1604 aa4.45□□□□□ -1.7
VPS29-202ENST00000447578 ARHGEF28Q8N1W1 1705 aaKnown RBP4.44□□□□□ -1.7
VPS29-202ENST00000447578 TMEM131LA2VDJ0 1609 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 IGKV2D-30A0A075B6S6 120 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 SYNDIG1LA6NDD5 238 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 A8MVJ9 347 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 UBE2Q2LH0YL09 131 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 DSCR3O14972 297 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 FYB1O15117 783 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 SCGB1D1O95968 90 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 IGHDP01880 384 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 CYP3A4P08684 503 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 DLDP09622 509 aaKnown RBP4.44□□□□□ -1.7
VPS29-202ENST00000447578 ACP5P13686 325 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 AKR1B1P15121 316 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 CREB1P16220 341 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 ACTN2P35609 894 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 RARSP54136 660 aaKnown RBP4.44□□□□□ -1.7
VPS29-202ENST00000447578 GOLGA8FQ08AF8 430 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 DCTN2Q13561 401 aaKnown RBP4.44□□□□□ -1.7
VPS29-202ENST00000447578 THOC5Q13769 683 aaKnown RBP4.44□□□□□ -1.7
VPS29-202ENST00000447578 FAM187BQ17R55 369 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 AWAT1Q58HT5 328 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 ARMC3Q5W041 872 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 INO80CQ6PI98 192 aaPredicted RBP4.44□□□□□ -1.7
VPS29-202ENST00000447578 ZNF813Q6ZN06 617 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 BCDIN3DQ7Z5W3 292 aaKnown RBP4.44□□□□□ -1.7
VPS29-202ENST00000447578 ADGRG6Q86SQ4 1221 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 LSM14AQ8ND56 463 aaKnown RBP4.44□□□□□ -1.7
VPS29-202ENST00000447578 PIGOQ8TEQ8 1089 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 NSMCE1Q8WV22 266 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 KIF1BPQ96EK5 621 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 MASTLQ96GX5 879 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 VCPIP1Q96JH7 1222 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 PRR25Q96S07 402 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 MMS19Q96T76 1030 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 ARHGAP39Q9C0H5 1083 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 INTS2Q9H0H0 1204 aaKnown RBP4.44□□□□□ -1.7
VPS29-202ENST00000447578 SLC25A18Q9H1K4 315 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 KCNK9Q9NPC2 374 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 SEPT11Q9NVA2 429 aaKnown RBP4.44□□□□□ -1.7
VPS29-202ENST00000447578 MGAT4CQ9UBM8 478 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 RIMS2Q9UQ26 1411 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 SHPRHQ149N8 1683 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 PREX1Q8TCU6 1659 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 DIP2BQ9P265 1576 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 MAPK8IP3Q9UPT6 1336 aa4.44□□□□□ -1.7
VPS29-202ENST00000447578 RIMBP3CA6NJZ7 1639 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 RIMBP3BA6NNM3 1639 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 RIMBP3Q9UFD9 1639 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 ALKQ9UM73 1620 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 AGLP35573 1532 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 LY6G6EA0A0G2JKS1 128 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 GTPBP1O00178 669 aaKnown RBP4.43□□□□□ -1.7
VPS29-202ENST00000447578 CA12O43570 354 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 PMPCBO75439 489 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 STARD3NLO95772 234 aa4.43□□□□□ -1.7
VPS29-202ENST00000447578 CYP19A1P11511 503 aaPredicted RBP4.43□□□□□ -1.7
VPS29-202ENST00000447578 PSMA4P25789 261 aaKnown RBP4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms