RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 COLEC10Q9Y6Z7 277 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 HNRNPRO43390 633 aaKnown RBP12.22□□□□□ -0.45
NEK1-201ENST00000439128 ERCC2P18074 760 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 MC4RP32245 332 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 RPIAP49247 311 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 NUDT2P50583 147 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 SH3BGRP55822 239 aaPredicted RBP12.22□□□□□ -0.45
NEK1-201ENST00000439128 OVGP1Q12889 678 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 RALGDSQ12967 914 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 PDGFRLQ15198 375 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 DNAJB7Q7Z6W7 309 aaPredicted RBP12.22□□□□□ -0.45
NEK1-201ENST00000439128 SH2D3CQ8N5H7 860 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 BTBD9Q96Q07 612 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 OSBPL2Q9H1P3 480 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 NRDE2Q9H7Z3 1164 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 ARL2BPQ9Y2Y0 163 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 CAPN6Q9Y6Q1 641 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 SALL3Q9BXA9 1300 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 C22orf31O95567 290 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 SNHG28P0DPA3 235 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 SKIV2L2P42285 1042 aaKnown RBP12.22□□□□□ -0.45
NEK1-201ENST00000439128 ZACNQ401N2 412 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 PLEKHM3Q6ZWE6 761 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 LEMD2Q8NC56 503 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 PLD4Q96BZ4 506 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 DUSP9Q99956 384 aaKnown RBP12.22□□□□□ -0.45
NEK1-201ENST00000439128 ABCB8Q9NUT2 735 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 USE1Q9NZ43 259 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 VTI1BQ9UEU0 232 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 FMN2Q9NZ56 1722 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 A0A0A0MRY4 1105 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 PLK1P53350 603 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 MMRN1Q13201 1228 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 TAF13Q15543 124 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 USP39Q53GS9 565 aaKnown RBP12.22□□□□□ -0.45
NEK1-201ENST00000439128 PPP1R15BQ5SWA1 713 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 IL27RAQ6UWB1 636 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 CELF5Q8N6W0 485 aaKnown RBP12.22□□□□□ -0.45
NEK1-201ENST00000439128 RPL10LQ96L21 214 aaKnown RBP12.22□□□□□ -0.45
NEK1-201ENST00000439128 SPATA13Q96N96 652 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 HEPHQ9BQS7 1158 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 TTLL2Q9BWV7 592 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 IL23AQ9NPF7 189 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 ETNK2Q9NVF9 386 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 IMPAD1Q9NX62 359 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 CHKBQ9Y259 395 aa12.22□□□□□ -0.45
NEK1-201ENST00000439128 SGTAO43765 313 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 MTHFRP42898 656 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 BLKP51451 505 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 BIKQ13323 160 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 CYLC2Q14093 348 aaPredicted RBP12.21□□□□□ -0.45
NEK1-201ENST00000439128 ECM1Q16610 540 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 ICE2Q659A1 982 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 SCARA3Q6AZY7 606 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 AMIGO3Q86WK7 504 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 LMLNQ96KR4 655 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 SERPINB12Q96P63 405 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 IL22Q9GZX6 179 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 DPEP3Q9H4B8 488 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 SEMA4BQ9NPR2 832 aaPredicted RBP12.21□□□□□ -0.45
NEK1-201ENST00000439128 RPRD1BQ9NQG5 326 aaKnown RBP12.21□□□□□ -0.45
NEK1-201ENST00000439128 KLQ9UEF7 1012 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 DDX3XO00571 662 aaKnown RBP eCLIP12.21□□□□□ -0.455e-16■■□□□ 13.2
NEK1-201ENST00000439128 ADH5P11766 374 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 UBE3AQ05086 875 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 DNAL1Q4LDG9 190 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 P3H2Q8IVL5 708 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 EPS8L1Q8TE68 723 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 TRIB2Q92519 343 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 ACDQ96AP0 544 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 SLC4A5Q9BY07 1137 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 DNAJC18Q9H819 358 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 ABI3Q9P2A4 366 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 FCF1Q9Y324 198 aaKnown RBP12.21□□□□□ -0.45
NEK1-201ENST00000439128 YIPF1Q9Y548 306 aa12.21□□□□□ -0.45
NEK1-201ENST00000439128 E9PAM4 449 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 RGS14O43566 566 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 PYGMP11217 842 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 LILRA4P59901 499 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 OCA2Q04671 838 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 AP5B1Q2VPB7 878 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 XKR6Q5GH73 641 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 CIR1Q86X95 450 aaPredicted RBP12.21□□□□□ -0.46
NEK1-201ENST00000439128 KCNV2Q8TDN2 545 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 EPS8L3Q8TE67 593 aaKnown RBP12.21□□□□□ -0.46
NEK1-201ENST00000439128 SELENOMQ8WWX9 145 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 THTPAQ9BU02 230 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 MRPS33Q9Y291 106 aaKnown RBP12.21□□□□□ -0.46
NEK1-201ENST00000439128 LAMTOR5O43504 91 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 CDK14O94921 469 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 TTC29Q8NA56 475 aaPredicted RBP12.21□□□□□ -0.46
NEK1-201ENST00000439128 AP2M1Q96CW1 435 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 SIPA1Q96FS4 1042 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 CCT7Q99832 543 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 DNAJC28Q9NX36 388 aa12.21□□□□□ -0.46
NEK1-201ENST00000439128 GTPBP1O00178 669 aaKnown RBP12.2□□□□□ -0.46
NEK1-201ENST00000439128 ABCG1P45844 678 aa12.2□□□□□ -0.46
NEK1-201ENST00000439128 RRP1BQ14684 758 aaKnown RBP12.2□□□□□ -0.46
NEK1-201ENST00000439128 NDUFA9Q16795 377 aa12.2□□□□□ -0.46
NEK1-201ENST00000439128 PTPRNQ16849 979 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms