RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PPP2CBP62714 309 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 PPP2CAP67775 309 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 TBX2Q13207 712 aaPredicted RBP15.44■□□□□ 0.06
LIMS3-201ENST00000437679 SLC14A1Q13336 389 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 DPYSQ14117 519 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 KRT81Q14533 505 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 KIF19Q2TAC6 998 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 HLA-BQ31612 363 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 MYLK3Q32MK0 819 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 SETMARQ53H47 684 aaPredicted RBP15.44■□□□□ 0.06
LIMS3-201ENST00000437679 SLC45A4Q5BKX6 768 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 PSAPL1Q6NUJ1 521 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 NEK5Q6P3R8 708 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 FBXL19Q6PCT2 694 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 TRIM69Q86WT6 500 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 LZTR1Q8N653 840 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 OR6K2Q8NGY2 324 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 SERAC1Q96JX3 654 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 OSBPL1AQ9BXW6 950 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 PACSIN1Q9BY11 444 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 SLC32A1Q9H598 525 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 EBF2Q9HAK2 575 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 DMTF1Q9Y222 760 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 ANKRD6Q9Y2G4 727 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 PCNX2A6NKB5 2137 aa15.44■□□□□ 0.06
LIMS3-201ENST00000437679 UPK3BL1B0FP48 263 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 UPK3BL2E5RIL1 263 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 RNF103O00237 685 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 DFFAO00273 331 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 VILLO15195 856 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 PRAMEF11O60813 436 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 RNGTTO60942 597 aaKnown RBP15.43■□□□□ 0.06
LIMS3-201ENST00000437679 PROSCO94903 275 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 PCDH8O95206 1070 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 GKP32189 559 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 BNC1Q01954 994 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 SLC25A11Q02978 314 aaKnown RBP15.43■□□□□ 0.06
LIMS3-201ENST00000437679 ATXN7L2Q5T6C5 722 aaPredicted RBP15.43■□□□□ 0.06
LIMS3-201ENST00000437679 AFMIDQ63HM1 303 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 NAPEPLDQ6IQ20 393 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 LAYNQ6UX15 382 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 POLNQ7Z5Q5 900 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 DEFB124Q8NES8 71 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 RBSNQ9H1K0 784 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 SP110Q9HB58 689 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 SPTLC3Q9NUV7 552 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 SNX11Q9Y5W9 270 aa15.43■□□□□ 0.06
LIMS3-201ENST00000437679 DOCK9Q9BZ29 2069 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 A0A1W2PQU0 124 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 J3KR12 359 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 GJB3O75712 270 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 UGT2B4P06133 528 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 ZNF883P0CG24 379 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 CEACAM1P13688 526 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 ADRB3P13945 408 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 AMPD1P23109 780 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 CD38P28907 300 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 CYTH1Q15438 398 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 ZNF805Q5CZA5 627 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 TXNRD3NBQ6F5E7 133 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 TMCO3Q6UWJ1 677 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 PARS2Q7L3T8 475 aaKnown RBP15.42■□□□□ 0.06
LIMS3-201ENST00000437679 ARHGAP12Q8IWW6 846 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 NPWQ8N729 165 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 NETO2Q8NC67 525 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 CSPG4P5Q96PW8 444 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 PDFQ9HBH1 243 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 PCDH18Q9HCL0 1135 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 TRPM6Q9BX84 2022 aa15.42■□□□□ 0.06
LIMS3-201ENST00000437679 C16orf96A6NNT2 1141 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 TMEM110-MUSTN1A8MSY1 372 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 PRAMEF26H0Y7S4 382 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 PALMO75781 387 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 CD59P13987 128 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 MAN1A1P33908 653 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 GJC1P36383 396 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 CTSKP43235 329 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 CDH6P55285 790 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 STAT4Q14765 748 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 GDPD4Q6W3E5 623 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 PIP4P1Q86T03 277 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 HORMAD1Q86X24 394 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 RAB7BQ96AH8 199 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 KLHL32Q96NJ5 620 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 IL21RQ9HBE5 538 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 TM7SF3Q9NS93 570 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 RCOR3Q9P2K3 495 aaPredicted RBP15.41■□□□□ 0.06
LIMS3-201ENST00000437679 LHX3Q9UBR4 397 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 IPO11Q9UI26 975 aaKnown RBP15.41■□□□□ 0.06
LIMS3-201ENST00000437679 FNDC3AQ9Y2H6 1198 aaKnown RBP15.41■□□□□ 0.06
LIMS3-201ENST00000437679 MFHAS1Q9Y4C4 1052 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 FADS3Q9Y5Q0 445 aa15.41■□□□□ 0.06
LIMS3-201ENST00000437679 A0A1W2PR77 199 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 NEMP1O14524 444 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 WNT9AO14904 365 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 GIPC1O14908 333 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 SLC31A1O15431 190 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 AP1G1O43747 822 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 DFNA5O60443 496 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 MAGEC1O60732 1142 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms