RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 SEMA3CQ99985 751 aa21.41■■□□□ 1.02
PTPRF-207ENST00000436724 ZFATQ9P243 1243 aa21.41■■□□□ 1.02
PTPRF-207ENST00000436724 MIA3Q5JRA6 1907 aa21.41■■□□□ 1.02
PTPRF-207ENST00000436724 ILVBLA1L0T0 632 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 GOLGA8TH3BQL2 631 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 CBX4O00257 560 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 MGAT5Q09328 741 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 ZNF235Q14590 738 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 SH2D5Q6ZV89 423 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 MARK2Q7KZI7 788 aaKnown RBP21.4■■□□□ 1.02
PTPRF-207ENST00000436724 BANPQ8N9N5 519 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 CDKL2Q92772 493 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 ATP2A3Q93084 1043 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 AGAP2Q99490 1192 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 DDX50Q9BQ39 737 aaKnown RBP21.4■■□□□ 1.02
PTPRF-207ENST00000436724 MUC3BQ9H195 1237 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 GRID1Q9ULK0 1009 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 SMG5Q9UPR3 1016 aaKnown RBP21.4■■□□□ 1.02
PTPRF-207ENST00000436724 C5orf67F2Z3F1 127 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 CDC25CP30307 473 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 GBP2P32456 591 aaPredicted RBP21.4■■□□□ 1.02
PTPRF-207ENST00000436724 OXCT1P55809 520 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 TNK2Q07912 1038 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 ZNF697Q5TEC3 545 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 SETD3Q86TU7 594 aaPredicted RBP21.4■■□□□ 1.02
PTPRF-207ENST00000436724 BBS7Q8IWZ6 715 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 WFDC5Q8TCV5 224 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 PPP1R2P1Q96PQ5 205 aa21.4■■□□□ 1.02
PTPRF-207ENST00000436724 TRAV19A0A0A6YYK7 116 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 MAGEB16A2A368 324 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 H0Y626 953 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 KDELR3O43731 214 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 MZF1P28698 734 aaPredicted RBP21.39■■□□□ 1.01
PTPRF-207ENST00000436724 SLC7A9P82251 487 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 HSP90AA5PQ58FG0 334 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 PACS1Q6VY07 963 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 SHKBP1Q8TBC3 707 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 TCP10LQ8TDR4 215 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 CCT6BQ92526 530 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 TMA16Q96EY4 203 aaKnown RBP21.39■■□□□ 1.01
PTPRF-207ENST00000436724 EXOC2Q96KP1 924 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 GCNAQ96QF7 691 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 KIFC1Q9BW19 673 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 POLR1EQ9GZS1 481 aaKnown RBP21.39■■□□□ 1.01
PTPRF-207ENST00000436724 RETREG1Q9H6L5 497 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 PLK2Q9NYY3 685 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 DNMT3BQ9UBC3 853 aaKnown RBP21.39■■□□□ 1.01
PTPRF-207ENST00000436724 CCL26Q9Y258 94 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 RWDD3Q9Y3V2 267 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 REV3LO60673 3130 aa21.39■■□□□ 1.01
PTPRF-207ENST00000436724 H0YHG0 523 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 AP3B1O00203 1094 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 RFPL1O75677 317 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 KRT38O76015 456 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 ASMTLO95671 621 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 LATS1O95835 1130 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 LACTB2Q53H82 288 aaPredicted RBP21.38■■□□□ 1.01
PTPRF-207ENST00000436724 PCID2Q5JVF3 399 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 SGSM3Q96HU1 749 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 ACE2Q9BYF1 805 aaPredicted RBP21.38■■□□□ 1.01
PTPRF-207ENST00000436724 CERS4Q9HA82 394 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 SLC17A7Q9P2U7 560 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 GBF1Q92538 1859 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 GFRA2O00451 464 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 SNAP91O60641 907 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 LPXNO60711 386 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 RGRP47804 291 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 UBE3AQ05086 875 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 SF3A3Q12874 501 aaKnown RBP eCLIP21.38■■□□□ 1.015e-6■■■■■ 39.5
PTPRF-207ENST00000436724 LINGO4Q6UY18 593 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 RBM23Q86U06 439 aaKnown RBP21.38■■□□□ 1.01
PTPRF-207ENST00000436724 RNF135Q8IUD6 432 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 CKAP2Q8WWK9 683 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 HTATIP2Q9BUP3 242 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 ACTR5Q9H9F9 607 aaPredicted RBP21.38■■□□□ 1.01
PTPRF-207ENST00000436724 VPS45Q9NRW7 570 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 C20orf96Q9NUD7 363 aaPredicted RBP21.38■■□□□ 1.01
PTPRF-207ENST00000436724 UBA2Q9UBT2 640 aaPredicted RBP21.38■■□□□ 1.01
PTPRF-207ENST00000436724 LSM7Q9UK45 103 aaKnown RBP21.38■■□□□ 1.01
PTPRF-207ENST00000436724 SH3BP1Q9Y3L3 701 aa21.38■■□□□ 1.01
PTPRF-207ENST00000436724 NTHL1P78549 312 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 SLC5A9Q2M3M2 681 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 GPR158Q5T848 1215 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 LGSNQ5TDP6 509 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 PKN3Q6P5Z2 889 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 KCNMB4Q86W47 210 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 HJURPQ8NCD3 748 aaPredicted RBP21.37■■□□□ 1.01
PTPRF-207ENST00000436724 CCDC197Q8NCU1 140 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 TADA1Q96BN2 335 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 NSMCE3Q96MG7 304 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 ZNF599Q96NL3 588 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 SSU72Q9NP77 194 aaKnown RBP21.37■■□□□ 1.01
PTPRF-207ENST00000436724 SLC2A6Q9UGQ3 507 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 TCP11X1B4DZS4 312 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 LEFTY2O00292 366 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 CLASP2O75122 1294 aaKnown RBP21.37■■□□□ 1.01
PTPRF-207ENST00000436724 VIMP08670 466 aaKnown RBP21.37■■□□□ 1.01
PTPRF-207ENST00000436724 SLC18A1P54219 525 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 ARF5P84085 180 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 SLC18A2Q05940 514 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms