RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 ATP13A3Q9H7F0 1226 aa7.55□□□□□ -1.2
CPSF6-202ENST00000435070 A8MV72 311 aaPredicted RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 GRID2O43424 1007 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 NADKO95544 446 aaPredicted RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 C4BPAP04003 597 aaKnown RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 HNRNPLP14866 589 aaKnown RBP eCLIP7.54□□□□□ -1.26e-8■■■□□ 16.3
CPSF6-202ENST00000435070 IST1P53990 364 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 FAM214AQ32MH5 1076 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 TMEM236Q5W0B7 351 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 FAM35AQ86V20 835 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 PLD5Q8N7P1 536 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 EFHD2Q96C19 240 aaPredicted RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 NRBF2Q96F24 287 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 SEPHS2Q99611 448 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 LTB4R2Q9NPC1 389 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 DNMT3BQ9UBC3 853 aaKnown RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 PRKAG2Q9UGJ0 569 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 KPNA7A9QM74 516 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 H0Y858 1186 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 BCAS1O75363 584 aaPredicted RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 IL7RP16871 459 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 MYF6P23409 242 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 UGT3A1Q6NUS8 523 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 STRA8Q7Z7C7 330 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 DCAF4Q8WV16 495 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 AGAP2Q99490 1192 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 NMRAL1Q9HBL8 299 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 NEK6Q9HC98 313 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 CHRAC1Q9NRG0 131 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 CISHQ9NSE2 258 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 USP21Q9UK80 565 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 SLC39A10Q9ULF5 831 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 ZNF142P52746 1687 aaPredicted RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 SYNJ2BP-COX16A0A087WUM0 186 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 MRASO14807 208 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 ASNA1O43681 348 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 RAP1GAPP47736 663 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 TRPC1P48995 793 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 MYL6P60660 151 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 GBE1Q04446 702 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 AGAP7PQ5VUJ5 663 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 ZNF534Q76KX8 674 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 RALGPS2Q86X27 583 aaPredicted RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 SIAH1Q8IUQ4 282 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 DDIASQ8IXT1 998 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 TMEM130Q8N3G9 435 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 FIG4Q92562 907 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 MAGED4Q96JG8 741 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 CPXM1Q96SM3 734 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 COX16Q9P0S2 106 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 N6AMT1Q9Y5N5 214 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 ILVBLA1L0T0 632 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 M0R3G1 203 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 INPP4BO15327 924 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 GH2P01242 217 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 C2P06681 752 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 LRPAP1P30533 357 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 PTPN7P35236 360 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 BMPR1AP36894 532 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 TFDP2Q14188 446 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 KIZQ2M2Z5 673 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 POC5Q8NA72 575 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 ZFYVE19Q96K21 471 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 MUS81Q96NY9 551 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 AS3MTQ9HBK9 375 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 CYTH4Q9UIA0 394 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 PTBP2Q9UKA9 531 aaKnown RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 UGT2A1Q9Y4X1 527 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 DDX60LQ5H9U9 1706 aaKnown RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 KCNQ2O43526 872 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 IDH3BO43837 385 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 RHOBTB1O94844 696 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 FARP2O94887 1054 aaPredicted RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 PLA2G16P53816 162 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 CDH8P55286 799 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 PPP1R3AQ16821 1122 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 OR7G1Q8NGA0 311 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 GLMNQ92990 594 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 DOK1Q99704 481 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 SH3GL1Q99961 368 aa7.54□□□□□ -1.2
CPSF6-202ENST00000435070 IPO11Q9UI26 975 aaKnown RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 PNMA8BQ9ULN7 279 aaPredicted RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 COL5A2P05997 1499 aaPredicted RBP7.54□□□□□ -1.2
CPSF6-202ENST00000435070 G3V2L1 256 aa7.53□□□□□ -1.2
CPSF6-202ENST00000435070 PRPSAP2O60256 369 aa7.53□□□□□ -1.2
CPSF6-202ENST00000435070 TRUB2O95900 331 aaKnown RBP7.53□□□□□ -1.2
CPSF6-202ENST00000435070 CDH1P12830 882 aa7.53□□□□□ -1.2
CPSF6-202ENST00000435070 FASP25445 335 aa7.53□□□□□ -1.2
CPSF6-202ENST00000435070 FASTKQ14296 549 aaKnown RBP7.53□□□□□ -1.2
CPSF6-202ENST00000435070 CAPRIN1Q14444 709 aaKnown RBP7.53□□□□□ -1.2
CPSF6-202ENST00000435070 ERMP1Q7Z2K6 904 aa7.53□□□□□ -1.2
CPSF6-202ENST00000435070 CCDC103Q8IW40 242 aa7.53□□□□□ -1.2
CPSF6-202ENST00000435070 ELMOD1Q8N336 334 aa7.53□□□□□ -1.2
CPSF6-202ENST00000435070 RYBPQ8N488 228 aaPredicted RBP7.53□□□□□ -1.2
CPSF6-202ENST00000435070 SDCCAG3Q96C92 435 aa7.53□□□□□ -1.2
CPSF6-202ENST00000435070 LRCH3Q96II8 777 aa7.53□□□□□ -1.2
CPSF6-202ENST00000435070 DMRTB1Q96MA1 342 aa7.53□□□□□ -1.2
CPSF6-202ENST00000435070 CITED4Q96RK1 184 aa7.53□□□□□ -1.2
CPSF6-202ENST00000435070 TARS2Q9BW92 718 aaKnown RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms