RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TEFMQ96QE5 360 aaKnown RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CHP1Q99653 195 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 DCLRE1BQ9H816 532 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 PCDH9Q9HC56 1237 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 PSMD13Q9UNM6 376 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 WRBO00258 174 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 CLDN4O14493 209 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 RSL1D1O76021 490 aaKnown RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 CYP17A1P05093 508 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 UBTFL6P0CB48 400 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 POLD2P49005 469 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 NDST1P52848 882 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ANXA8L1Q5VT79 327 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 AFTPHQ6ULP2 937 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 CHRDL2Q6WN34 429 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 RTL4Q6ZR62 310 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 LPCAT2Q7L5N7 544 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 PARGQ86W56 976 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 RASAL3Q86YV0 1011 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 IQCF2Q8IXL9 164 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 CCDC33Q8N5R6 958 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SPATA20Q8TB22 786 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 PTCD2Q8WV60 388 aaKnown RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 MYDGFQ969H8 173 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SEPHS2Q99611 448 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TCF25Q9BQ70 676 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 BRINP2Q9C0B6 783 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ASB8Q9H765 288 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 DNAJC16Q9Y2G8 782 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TBC1D3DA0A087WVF3 549 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TBC1D3IA0A087WXS9 549 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TBC1D3EA0A087X179 549 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TBC1D3KA0A087X1G2 549 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TBC1D3FA6NER0 549 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TBC1D3LB9A6J9 549 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SNAP23O00161 211 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SSNA1O43805 119 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SEMA3DO95025 777 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TBC1D3HP0C7X1 549 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 YBX3P16989 372 aaKnown RBP eCLIP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ME2P23368 584 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 NOS2P35228 1153 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 GP5P40197 560 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 NOGQ13253 232 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 RFTN2Q52LD8 501 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 PPP1R15BQ5SWA1 713 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TBC1D3GQ6DHY5 549 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TBC1D3CQ6IPX1 549 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 JAZF1Q86VZ6 243 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 HPS6Q86YV9 775 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TBC1D3Q8IZP1 549 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SLC9A6Q92581 669 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 MIEF2Q96C03 454 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 EFHD2Q96C19 240 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TKTL2Q9H0I9 626 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SMURF2Q9HAU4 748 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SLC35C2Q9NQQ7 365 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 AGPAT5Q9NUQ2 364 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 MTRRQ9UBK8 725 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 NOX1Q9Y5S8 564 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 MED14O60244 1454 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TBL1XO60907 577 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 RASGRP1O95267 797 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 VARSP26640 1264 aaKnown RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ADSLP30566 484 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 HSD17B3P37058 310 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 RPIAP49247 311 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ALDH3A2P51648 485 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 AQP5P55064 265 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ELOAQ14241 798 aaKnown RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SUZ12Q15022 739 aaKnown RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SNAP47Q5SQN1 464 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 FBXO33Q7Z6M2 555 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ZC3H7AQ8IWR0 971 aaKnown RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 OR5T3Q8NGG3 340 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ZHX1-C8orf76Q96EF9 292 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ADAM2Q99965 735 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 NUAK2Q9H093 628 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 THAP2Q9H0W7 228 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 EHD4Q9H223 541 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 A0A0B4J269 797 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SLC28A2O43868 658 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 UBXN7O94888 489 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ETS1P14921 441 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 PPP4CP60510 307 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 MRPS22P82650 360 aaKnown RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 PLA2R1Q13018 1463 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TTC7BQ86TV6 843 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ZNF34Q8IZ26 560 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TTC29Q8NA56 475 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 MAGEE2Q8TD90 523 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SGCDQ92629 289 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 KAT5Q92993 513 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 TLE6Q9H808 572 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 RBM12Q9NTZ6 932 aaKnown RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 ERGIC3Q9Y282 383 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 FAM92AA1XBS5 289 aa6.92□□□□□ -1.3
SCN1A-204ENST00000423058 LIN7AO14910 233 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-204ENST00000423058 SCGNO76038 276 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms