RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 MAGEA3P43357 314 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 HK2P52789 917 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 POLR2LP62875 67 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 NSUN2Q08J23 767 aaKnown RBP eCLIP8.5□□□□□ -1.05
USP54-203ENST00000418501 FASTKD3Q14CZ7 662 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 PDK4Q16654 411 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 FAM83EQ2M2I3 478 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 ARMC12Q5T9G4 340 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 ARHGAP24Q8N264 748 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 DCAF4L2Q8NA75 395 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 IMP4Q96G21 291 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 TSSK1BQ9BXA7 367 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 RHOJQ9H4E5 214 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 TMPRSS4Q9NRS4 437 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 IARS2Q9NSE4 1012 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 TXLNGQ9NUQ3 528 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 TMEM30AQ9NV96 361 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 COMMD10Q9Y6G5 202 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 USH1CQ9Y6N9 552 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 TCRBV7S3A2A0A539 114 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 TBX18O95935 607 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 RBP1P09455 135 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 STMN1P16949 149 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 CRHR1P34998 444 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 HNRNPH2P55795 449 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 MROH9Q5TGP6 573 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 AGAP9Q5VTM2 703 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 NEPROQ6NW34 567 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 C14orf80Q86SX3 495 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 ARHGAP12Q8IWW6 846 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 CRIPAKQ8N1N5 446 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 MPP5Q8N3R9 675 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 STYXQ8WUJ0 223 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 DCAKDQ8WVC6 231 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 SYTL2Q9HCH5 934 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 PCMTD2Q9NV79 361 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 MTO1Q9Y2Z2 717 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 MRPS23Q9Y3D9 190 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 SLC30A1Q9Y6M5 507 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 INSIG1O15503 277 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 TSPAN3O60637 253 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 OAS1P00973 400 aaKnown RBP8.49□□□□□ -1.05
USP54-203ENST00000418501 HLA-DQB2P05538 268 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 SERPINA4P29622 427 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 SCNN1BP51168 640 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 POU4F1Q01851 419 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 TNK2Q07912 1038 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 ZBTB17Q13105 803 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 TNFAIP8L3Q5GJ75 292 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 AFTPHQ6ULP2 937 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.49□□□□□ -1.05
USP54-203ENST00000418501 NPWQ8N729 165 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 MRPL43Q8N983 215 aaKnown RBP8.49□□□□□ -1.05
USP54-203ENST00000418501 POF1BQ8WVV4 589 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 SPOCK2Q92563 424 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 TCF12Q99081 682 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 ELAC2Q9BQ52 826 aaKnown RBP8.49□□□□□ -1.05
USP54-203ENST00000418501 DHRS4Q9BTZ2 278 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 SLC2A11Q9BYW1 496 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 MOCS1Q9NZB8 636 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.49□□□□□ -1.05
USP54-203ENST00000418501 ARHGAP26Q9UNA1 814 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 APOBEC2Q9Y235 224 aaKnown RBP8.49□□□□□ -1.05
USP54-203ENST00000418501 ACOT9Q9Y305 439 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 CCDC189A1A4V9 331 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 GIPC1O14908 333 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 TGM5O43548 720 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 AVILO75366 819 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 NDUFS3O75489 264 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 SEC24AO95486 1093 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 ADH1CP00326 375 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 ASLP04424 464 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 CNPP09543 421 aaKnown RBP8.49□□□□□ -1.05
USP54-203ENST00000418501 PYGBP11216 843 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 IGFBP6P24592 240 aaPredicted RBP8.49□□□□□ -1.05
USP54-203ENST00000418501 LIMK2P53671 638 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 BCL2L1Q07817 233 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 STX3Q13277 289 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 GPM6BQ13491 265 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 EIF4EBP2Q13542 120 aaPredicted RBP8.49□□□□□ -1.05
USP54-203ENST00000418501 HTR3DQ70Z44 454 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 TMEM135Q86UB9 458 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 ARL14EPQ8N8R7 260 aaPredicted RBP8.49□□□□□ -1.05
USP54-203ENST00000418501 MAB21L3Q8N8X9 362 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 MDM1Q8TC05 714 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 SEC16BQ96JE7 1060 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 ATP13A3Q9H7F0 1226 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 ARNT2Q9HBZ2 717 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 STARD13Q9Y3M8 1113 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 H3BMM5 538 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 S100BP04271 92 aaPredicted RBP8.49□□□□□ -1.05
USP54-203ENST00000418501 ITGA2BP08514 1039 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 KCNQ1P51787 676 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 SLC18A2Q05940 514 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 POU6F1Q14863 301 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 RGS9BPQ6ZS82 235 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 YTHDF3Q7Z739 585 aaKnown RBP8.49□□□□□ -1.05
USP54-203ENST00000418501 TTC9BQ8N6N2 239 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 BRSK1Q8TDC3 778 aa8.49□□□□□ -1.05
USP54-203ENST00000418501 ELMO2Q96JJ3 720 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms