RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 BNC1Q01954 994 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 RUNX3Q13761 415 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 ELOCQ15369 112 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 EID3Q8N140 333 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 SLC30A5Q8TAD4 765 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 ADAM32Q8TC27 787 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 HCAR2Q8TDS4 363 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 BTN2A2Q8WVV5 523 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 ATP6V1G3Q96LB4 118 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 FRMPD4Q14CM0 1322 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.39□□□□□ -1.23
SCN9A-202ENST00000409435 F8VZ95 297 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 BTN3A3O00478 584 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 ATP6V1B1P15313 513 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 GRIA2P42262 883 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 ZBED6P86452 979 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 ZC3H12AQ5D1E8 599 aaKnown RBP7.39□□□□□ -1.23
SCN9A-202ENST00000409435 TFDP3Q5H9I0 405 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 MANEAQ5SRI9 462 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 KLHL17Q6TDP4 642 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 ENPP7Q6UWV6 458 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 SPATA21Q7Z572 469 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 TMEM145Q8NBT3 493 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 MAPK15Q8TD08 544 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 PYROXD1Q8WU10 500 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 CNDP1Q96KN2 507 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 CDH19Q9H159 772 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 TUBGCP4Q9UGJ1 667 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 AURKCQ9UQB9 309 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 DMTF1Q9Y222 760 aa7.39□□□□□ -1.23
SCN9A-202ENST00000409435 RASA4BC9J798 803 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 TK2O00142 265 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 RASA4O43374 803 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 MICAL2O94851 1124 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 MAGOHP61326 146 aaKnown RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 NCALDP61601 193 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 DR1Q01658 176 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 TRIP13Q15645 432 aaPredicted RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 KCTD21Q4G0X4 260 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 AKIRIN2Q53H80 203 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 ELOA2Q8IYF1 753 aaPredicted RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 RCOR2Q8IZ40 523 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 CLEC4FQ8N1N0 589 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 FAM45AQ8TCE6 357 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 ZNF473Q8WTR7 871 aaKnown RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 KLK6Q92876 244 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 HHIPQ96QV1 700 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 HEPHQ9BQS7 1158 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 GSDMCQ9BYG8 508 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 SLC29A3Q9BZD2 475 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 MMADHCQ9H3L0 296 aaPredicted RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 COMMD8Q9NX08 183 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 WWOXQ9NZC7 414 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 TMEM221A6NGB7 291 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 M0R296 226 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 QSOX1O00391 747 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 FGF10O15520 208 aaPredicted RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 KRT38O76015 456 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 ABCB1P08183 1280 aaPredicted RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 PAEPP09466 180 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 NOVA1P51513 510 aaKnown RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 ARL4CP56559 192 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 STK4Q13043 487 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 RRM2BQ7LG56 351 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 ARID3BQ8IVW6 561 aaPredicted RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 ZCCHC7Q8N3Z6 543 aaKnown RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 OTUB2Q96DC9 234 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 LPIN3Q9BQK8 851 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 RHBGQ9H310 441 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 CD248Q9HCU0 757 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 MRPL39Q9NYK5 338 aaKnown RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 PLAGL2Q9UPG8 496 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 CCDC188H7C350 402 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 AKAP10O43572 662 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 C22orf31O95567 290 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 MYOGP15173 224 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 EIF4A3P38919 411 aaKnown RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 ZNF135P52742 658 aaPredicted RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 ABATP80404 500 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 BOP1Q14137 746 aaKnown RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 CYP2A13Q16696 494 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 SPDYAQ5MJ70 313 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 PARGQ86W56 976 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 MAP4K3Q8IVH8 894 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 CCDC36Q8IYA8 594 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 DEFB106AQ8N104 65 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 DENND1AQ8TEH3 1009 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 COL26A1Q96A83 441 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 PRR11Q96HE9 360 aaPredicted RBP7.38□□□□□ -1.23
SCN9A-202ENST00000409435 R3HDMLQ9H3Y0 253 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 NCKIPSDQ9NZQ3 722 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 PAPPAQ13219 1627 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 STMND1H3BQB6 276 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 NPC1O15118 1278 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 GFRA3O60609 400 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 FAM107AO95990 144 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 COX7A2P14406 83 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 EPCAMP16422 314 aa7.38□□□□□ -1.23
SCN9A-202ENST00000409435 CTSOP43234 321 aaPredicted RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms