RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 CELF5Q8N6W0 485 aaKnown RBP13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 CCNYQ8ND76 341 aa13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 DEPDC1BQ8WUY9 529 aa13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 NELL1Q92832 810 aa13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 KLHL29Q96CT2 875 aa13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 SIGLEC10Q96LC7 697 aa13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 ULBP1Q9BZM6 244 aa13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 RAB6CQ9H0N0 254 aa13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 SAR1AQ9NR31 198 aa13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 DONSONQ9NYP3 566 aa13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 MTO1Q9Y2Z2 717 aaKnown RBP13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 INSL5Q9Y5Q6 135 aa13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 FAM208BQ5VWN6 2430 aa13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 CNOT1A5YKK6 2376 aaKnown RBP13.14□□□□□ -0.31
SMARCB1-203ENST00000407082 PATJQ8NI35 1801 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 TRIM49D1C9J1S8 452 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 BIRC5O15392 142 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 CREB3O43889 395 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 LRG1P02750 347 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 POLBP06746 335 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 HNRNPA1P09651 372 aaKnown RBP eCLIP13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 NQO1P15559 274 aaKnown RBP13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 CCNFP41002 786 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 MAGEA11P43364 429 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 MNAT1P51948 309 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 EPHB3P54753 998 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 RPL10AP62906 217 aaKnown RBP13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 SLC10A2Q12908 348 aaPredicted RBP13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 NME3Q13232 169 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 FRG1Q14331 258 aaKnown RBP13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 DDR2Q16832 855 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 SPANXN3Q5MJ09 141 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 N4BP2L1Q5TBK1 243 aaPredicted RBP13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 ARMC3Q5W041 872 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 FBXW10Q5XX13 1052 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 CYB5D1Q6P9G0 228 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 UNC5AQ6ZN44 842 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 PRR23CQ6ZRP0 262 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 FAM47EQ6ZV65 393 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 MARK2Q7KZI7 788 aaKnown RBP13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 AGGF1Q8N302 714 aaeCLIP13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 INPP5DQ92835 1189 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 TSSK1BQ9BXA7 367 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 FAM96AQ9H5X1 160 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 WDCPQ9H6R7 721 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 CSNK1G1Q9HCP0 422 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 PRMT8Q9NR22 394 aaPredicted RBP13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 ABCF3Q9NUQ8 709 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 HCFC1R1Q9NWW0 138 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 TXNDC16Q9P2K2 825 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 YIPF1Q9Y548 306 aa13.13□□□□□ -0.31
SMARCB1-203ENST00000407082 RNF103O00237 685 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 DCLK1O15075 740 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 MGRN1O60291 552 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 ALDH1A2O94788 518 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 METTL18O95568 372 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 DHRS4L1P0CG22 281 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 PYGBP11216 843 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 NCAM1P13591 858 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 TFE3P19532 575 aaPredicted RBP13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 HOXA9P31269 272 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 NPY2RP49146 381 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 GPR15P49685 360 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 CACNA2D1P54289 1103 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 PLD1Q13393 1074 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 DPYSQ14117 519 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 EFTUD2Q15029 972 aaKnown RBP eCLIP13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 CSRP2Q16527 193 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 INSCQ1MX18 579 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 BRMS1LQ5PSV4 323 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 SDHAF4Q5VUM1 108 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 PM20D1Q6GTS8 502 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 CASC4Q6P4E1 433 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 KYAT3Q6YP21 454 aaKnown RBP13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 PID1Q7Z2X4 250 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 IGDCC3Q8IVU1 814 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 ELMOD1Q8N336 334 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 LZTR1Q8N653 840 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 GIPC2Q8TF65 315 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 SREK1Q8WXA9 508 aaKnown RBP13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 P2RY11Q96G91 374 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 KCNK16Q96T55 309 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 SIKE1Q9BRV8 207 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 WDR83Q9BRX9 315 aaKnown RBP13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 PLA2G2FQ9BZM2 168 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 OSBPL2Q9H1P3 480 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 LRRC40Q9H9A6 602 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 KIF9Q9HAQ2 790 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 DMAP1Q9NPF5 467 aaPredicted RBP13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 TMEM30AQ9NV96 361 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 NSMCE4AQ9NXX6 385 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 BFARQ9NZS9 450 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 DCDC2Q9UHG0 476 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 GRID1Q9ULK0 1009 aa13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 MRPS23Q9Y3D9 190 aaKnown RBP13.12□□□□□ -0.31
SMARCB1-203ENST00000407082 FOXO6A8MYZ6 492 aa13.11□□□□□ -0.31
SMARCB1-203ENST00000407082 MFSD11O43934 449 aa13.11□□□□□ -0.31
SMARCB1-203ENST00000407082 LRP3O75074 770 aa13.11□□□□□ -0.31
SMARCB1-203ENST00000407082 BEST1O76090 585 aa13.11□□□□□ -0.31
SMARCB1-203ENST00000407082 UNC5CO95185 931 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms