RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 XYLT2Q9H1B5 865 aa12.08□□□□□ -0.47
HMGB1-206ENST00000405805 TOR3AQ9H497 397 aa12.08□□□□□ -0.47
HMGB1-206ENST00000405805 RPL26L1Q9UNX3 145 aaKnown RBP12.08□□□□□ -0.47
HMGB1-206ENST00000405805 NHSQ6T4R5 1651 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 TIMM44O43615 452 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 PIRTP0C851 137 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 THOP1P52888 689 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 BFSP2Q13515 415 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 OR6J1Q8NGC5 347 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 WDR83Q9BRX9 315 aaKnown RBP12.08□□□□□ -0.48
HMGB1-206ENST00000405805 SLC39A3Q9BRY0 314 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 USP29Q9HBJ7 922 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 ADARB2Q9NS39 739 aaKnown RBP12.08□□□□□ -0.48
HMGB1-206ENST00000405805 ERI2A8K979 691 aaKnown RBP12.08□□□□□ -0.48
HMGB1-206ENST00000405805 ZBTB24O43167 697 aaPredicted RBP12.08□□□□□ -0.48
HMGB1-206ENST00000405805 B4GALT4O60513 344 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 DNAJA2O60884 412 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 HDCP19113 662 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 TFEBP19484 476 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 GRIA3P42263 894 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 VPS50Q96JG6 964 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 SIGLEC10Q96LC7 697 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 CHID1Q9BWS9 393 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 GPAMQ9HCL2 828 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 CROTQ9UKG9 612 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 PHF24Q9UPV7 400 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 MAST2Q6P0Q8 1798 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 ANKRD33BA6NCL7 494 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 CASTOR2A6NHX0 329 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 ASB14A6NK59 587 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 KCNU1A8MYU2 1149 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 F8W8V4 182 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 UBDO15205 165 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 HDAC3O15379 428 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 SLC25A27O95847 323 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 PAMP19021 973 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 SLC10A2Q12908 348 aaPredicted RBP12.08□□□□□ -0.48
HMGB1-206ENST00000405805 FASTKQ14296 549 aaKnown RBP12.08□□□□□ -0.48
HMGB1-206ENST00000405805 LSM12Q3MHD2 195 aaKnown RBP12.08□□□□□ -0.48
HMGB1-206ENST00000405805 GATAD2AQ86YP4 633 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 DENND6AQ8IWF6 608 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 CATSPER1Q8NEC5 780 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 PPHLN1Q8NEY8 458 aaKnown RBP12.08□□□□□ -0.48
HMGB1-206ENST00000405805 FNIP1Q8TF40 1166 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 PBXIP1Q96AQ6 731 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 CDCA5Q96FF9 252 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 ZFRQ96KR1 1074 aaKnown RBP12.08□□□□□ -0.48
HMGB1-206ENST00000405805 NAT9Q9BTE0 207 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 POMKQ9H5K3 350 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 RSL24D1Q9UHA3 163 aaKnown RBP12.08□□□□□ -0.48
HMGB1-206ENST00000405805 TNFSF13BQ9Y275 285 aa12.08□□□□□ -0.48
HMGB1-206ENST00000405805 RGSL1A5PLK6 1076 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 FOXD2O60548 495 aaPredicted RBP12.07□□□□□ -0.48
HMGB1-206ENST00000405805 TIPRLO75663 272 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 MT-CYBP00156 380 aaPredicted RBP12.07□□□□□ -0.48
HMGB1-206ENST00000405805 CNTFP26441 200 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 ETV4P43268 484 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 TAF6P49848 677 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 GRM3Q14832 879 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 WSCD1Q658N2 575 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 RIOX2Q8IUF8 465 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 ZNF567Q8N184 647 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 TCAIMQ8N3R3 496 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 BLOC1S5Q8TDH9 187 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 CPNE1Q99829 537 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 ZNF670Q9BS34 389 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 ASB7Q9H672 318 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 NOL11Q9H8H0 719 aaKnown RBP12.07□□□□□ -0.48
HMGB1-206ENST00000405805 CDHR5Q9HBB8 845 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 SSU72Q9NP77 194 aaKnown RBP12.07□□□□□ -0.48
HMGB1-206ENST00000405805 C12orf4Q9NQ89 552 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 RBM22Q9NW64 420 aaKnown RBP eCLIP12.07□□□□□ -0.48
HMGB1-206ENST00000405805 IPPQ9Y573 584 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 NFASCO94856 1347 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 INPP4BO15327 924 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 SRP72O76094 671 aaKnown RBP12.07□□□□□ -0.48
HMGB1-206ENST00000405805 TGFB3P10600 412 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 IL10P22301 178 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 KPNA2P52292 529 aaKnown RBP12.07□□□□□ -0.48
HMGB1-206ENST00000405805 CDH15P55291 814 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 MAXP61244 160 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 GRTP1Q5TC63 336 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 GPR107Q5VW38 600 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 NAPEPLDQ6IQ20 393 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 DCBLD1Q8N8Z6 715 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 DNAJB3Q8WWF6 145 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 CDH19Q9H159 772 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 STMN3Q9NZ72 180 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 PKD2L2Q9NZM6 624 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 NCKIPSDQ9NZQ3 722 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 CIDEBQ9UHD4 219 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 VPS51Q9UID3 782 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 TSPAN4O14817 238 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 ALDOAP04075 364 aaKnown RBP12.07□□□□□ -0.48
HMGB1-206ENST00000405805 CKMT2P17540 419 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 ITGAXP20702 1163 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 TUBA1BP68363 451 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 MPP1Q00013 466 aa12.07□□□□□ -0.48
HMGB1-206ENST00000405805 ZIK1Q3SY52 487 aaPredicted RBP12.07□□□□□ -0.48
HMGB1-206ENST00000405805 LCLAT1Q6UWP7 414 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms