RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 SEPT10Q9P0V9 454 aa29.77■■■□□ 2.36
USP42-202ENST00000404008 IL36AQ9UHA7 158 aa29.77■■■□□ 2.36
USP42-202ENST00000404008 PPM1HQ9ULR3 514 aa29.77■■■□□ 2.36
USP42-202ENST00000404008 BCLAF3A2AJT9 711 aaKnown RBP29.76■■■□□ 2.35
USP42-202ENST00000404008 PGRMC1O00264 195 aaKnown RBP29.76■■■□□ 2.35
USP42-202ENST00000404008 MTSS1O43312 755 aa29.76■■■□□ 2.35
USP42-202ENST00000404008 RBL1P28749 1068 aa29.76■■■□□ 2.35
USP42-202ENST00000404008 CSNK1DP48730 415 aa29.76■■■□□ 2.35
USP42-202ENST00000404008 DMWDQ09019 674 aa29.76■■■□□ 2.35
USP42-202ENST00000404008 DARS2Q6PI48 645 aaKnown RBP29.76■■■□□ 2.35
USP42-202ENST00000404008 CACUL1Q86Y37 369 aa29.76■■■□□ 2.35
USP42-202ENST00000404008 SIPA1Q96FS4 1042 aa29.76■■■□□ 2.35
USP42-202ENST00000404008 SARDHQ9UL12 918 aa29.76■■■□□ 2.35
USP42-202ENST00000404008 DNPEPQ9ULA0 475 aa29.76■■■□□ 2.35
USP42-202ENST00000404008 WASF2Q9Y6W5 498 aa29.76■■■□□ 2.35
USP42-202ENST00000404008 LIASO43766 372 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 POP4O95707 220 aaKnown RBP29.75■■■□□ 2.35
USP42-202ENST00000404008 HLA-DQB2P05538 268 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 PTPN3P26045 913 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 WASHC5Q12768 1159 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 CST6Q15828 149 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 PGBD3Q8N328 593 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 TMIEQ8NEW7 156 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 GRIN3AQ8TCU5 1115 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 C1orf54Q8WWF1 131 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 PRCCQ92733 491 aaPredicted RBP29.75■■■□□ 2.35
USP42-202ENST00000404008 NAP1L3Q99457 506 aaPredicted RBP29.75■■■□□ 2.35
USP42-202ENST00000404008 CEP41Q9BYV8 373 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 ZDHHC6Q9H6R6 413 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 HAUS2Q9NVX0 235 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 EVLQ9UI08 416 aaPredicted RBP29.75■■■□□ 2.35
USP42-202ENST00000404008 ATP8A1Q9Y2Q0 1164 aa29.75■■■□□ 2.35
USP42-202ENST00000404008 KRIT1O00522 736 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 GJB3O75712 270 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 NEBLO76041 1014 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 IL1BP01584 269 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 PRNPP04156 253 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 CR2P20023 1033 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 GKP32189 559 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 PSMD8P48556 350 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 MAXP61244 160 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 ZBTB16Q05516 673 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 ZNF528Q3MIS6 628 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 ARSIQ5FYB1 569 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 ALG1LQ6GMV1 187 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 KIAA1324Q6UXG2 1013 aaKnown RBP29.74■■■□□ 2.35
USP42-202ENST00000404008 SRLQ86TD4 932 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 CNTD1Q8N815 330 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 PIP4K2CQ8TBX8 421 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 POLR1EQ9GZS1 481 aaKnown RBP29.74■■■□□ 2.35
USP42-202ENST00000404008 SMARCAL1Q9NZC9 954 aa29.74■■■□□ 2.35
USP42-202ENST00000404008 PLXND1Q9Y4D7 1925 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 CCDC163A0A0D9SF12 145 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 INSIG1O15503 277 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 LEFTY1O75610 366 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 ADH1BP00325 375 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 SCNN1BP51168 640 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 BYSLQ13895 437 aaKnown RBP29.73■■■□□ 2.35
USP42-202ENST00000404008 CCNG2Q16589 344 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 TEX44Q53QW1 395 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 FAM182AQ5T1J6 154 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 NKD2Q969F2 451 aaPredicted RBP29.73■■■□□ 2.35
USP42-202ENST00000404008 LRIG1Q96JA1 1093 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 NUDCD1Q96RS6 583 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 FERMT1Q9BQL6 677 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 CPEB1Q9BZB8 566 aaKnown RBP29.73■■■□□ 2.35
USP42-202ENST00000404008 TPSD1Q9BZJ3 242 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 USP29Q9HBJ7 922 aa29.73■■■□□ 2.35
USP42-202ENST00000404008 TTC24A2A3L6 582 aaPredicted RBP29.72■■■□□ 2.35
USP42-202ENST00000404008 RNF103O00237 685 aa29.72■■■□□ 2.35
USP42-202ENST00000404008 ZNF189O75820 626 aaPredicted RBP29.72■■■□□ 2.35
USP42-202ENST00000404008 DNTTP04053 509 aa29.72■■■□□ 2.35
USP42-202ENST00000404008 RAD51Q06609 339 aa29.72■■■□□ 2.35
USP42-202ENST00000404008 OASLQ15646 514 aaKnown RBP29.72■■■□□ 2.35
USP42-202ENST00000404008 NELL1Q92832 810 aa29.72■■■□□ 2.35
USP42-202ENST00000404008 AGAP3Q96P47 875 aa29.72■■■□□ 2.35
USP42-202ENST00000404008 VAT1Q99536 393 aa29.72■■■□□ 2.35
USP42-202ENST00000404008 TTLL3Q9Y4R7 772 aa29.72■■■□□ 2.35
USP42-202ENST00000404008 C1QTNF3-AMACRE9PGA6 284 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 AXIN1O15169 862 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 MID1O15344 667 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 KCNN4O15554 427 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 SP9P0CG40 484 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 SLC8A1P32418 973 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 MAPK8P45983 427 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 FNTBP49356 437 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 NRLP54845 237 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 AP1S1P61966 158 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 ITKQ08881 620 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 RALGPS1Q5JS13 557 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 FAM46CQ5VWP2 391 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 CREG2Q8IUH2 290 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 PRELID2Q8N945 189 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 TEKT5Q96M29 485 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 NSMCE3Q96MG7 304 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 OSBPL1AQ9BXW6 950 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 FAM126AQ9BYI3 521 aaPredicted RBP29.71■■■□□ 2.35
USP42-202ENST00000404008 PABPC3Q9H361 631 aaKnown RBP29.71■■■□□ 2.35
USP42-202ENST00000404008 SCUBE2Q9NQ36 999 aa29.71■■■□□ 2.35
USP42-202ENST00000404008 HOMER3Q9NSC5 361 aa29.71■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms