RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CALCOCO2Q13137 446 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 C2orf27AQ580R0 203 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 CARD16Q5EG05 197 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 TJAP1Q5JTD0 557 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 IZUMO3Q5VZ72 239 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 SDE2Q6IQ49 451 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 Q6ZVU0 165 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 SRLQ86TD4 932 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 CHPFQ8IZ52 775 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 BBOF1Q8ND07 529 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 OR2AP1Q8NGE2 309 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 SPATA22Q8NHS9 363 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 EZH1Q92800 747 aaPredicted RBP18.32■□□□□ 0.52
SDC1-203ENST00000403076 MYO19Q96H55 970 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 PPP1R2P1Q96PQ5 205 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 NUDCD1Q96RS6 583 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 RBM15Q96T37 977 aaKnown RBP eCLIP18.32■□□□□ 0.52
SDC1-203ENST00000403076 CD320Q9NPF0 282 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 CACNA2D2Q9NY47 1150 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 UBP1Q9NZI7 540 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 SUN2Q9UH99 717 aa18.32■□□□□ 0.52
SDC1-203ENST00000403076 TPX2Q9ULW0 747 aaKnown RBP18.32■□□□□ 0.52
SDC1-203ENST00000403076 FARP1Q9Y4F1 1045 aaPredicted RBP18.32■□□□□ 0.52
SDC1-203ENST00000403076 ESYT3A0FGR9 886 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 ANTXRLA6NF34 631 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 DNALI1O14645 258 aaPredicted RBP18.31■□□□□ 0.52
SDC1-203ENST00000403076 NPC1O15118 1278 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 INSIG1O15503 277 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 GSRP00390 522 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 SERPINF2P08697 491 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 HNRNPLP14866 589 aaKnown RBP eCLIP18.31■□□□□ 0.52
SDC1-203ENST00000403076 IVDP26440 423 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 WASP42768 502 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 RPL21P46778 160 aaKnown RBP18.31■□□□□ 0.52
SDC1-203ENST00000403076 GEMP55040 296 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 RAD51Q06609 339 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 FBXO43Q4G163 708 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 SYCP2LQ5T4T6 812 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 PCGF5Q86SE9 256 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 IFT20Q8IY31 132 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 SIX5Q8N196 739 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 ARRDC2Q8TBH0 407 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 IFT81Q8WYA0 676 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 IMP4Q96G21 291 aaKnown RBP18.31■□□□□ 0.52
SDC1-203ENST00000403076 ACOX2Q99424 681 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 EPC1Q9H2F5 836 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 MTG2Q9H4K7 406 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 NOD2Q9HC29 1040 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 FAM114A2Q9NRY5 505 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 EVLQ9UI08 416 aaPredicted RBP18.31■□□□□ 0.52
SDC1-203ENST00000403076 ANAPC5Q9UJX4 755 aa18.31■□□□□ 0.52
SDC1-203ENST00000403076 AAR2Q9Y312 384 aaKnown RBP18.31■□□□□ 0.52
SDC1-203ENST00000403076 EDDM13A0A1B0GTR0 161 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 TARSL2A2RTX5 802 aaKnown RBP18.3■□□□□ 0.52
SDC1-203ENST00000403076 KRBA1A5PL33 1030 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 WASH3PC4AMC7 463 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 STK25O00506 426 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 NDC80O14777 642 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 PSMD3O43242 534 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 PMPCBO75439 489 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 ZNF821O75541 412 aaPredicted RBP18.3■□□□□ 0.52
SDC1-203ENST00000403076 GJB3O75712 270 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 EPHX1P07099 455 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 APRTP07741 180 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 ITIH2P19823 946 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 IL12RB1P42701 662 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 KIR2DL1P43626 348 aaPredicted RBP18.3■□□□□ 0.52
SDC1-203ENST00000403076 MAPK8P45983 427 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 SEMA5AQ13591 1074 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 HNRNPA1L2Q32P51 320 aaKnown RBP18.3■□□□□ 0.52
SDC1-203ENST00000403076 ALG1LQ6GMV1 187 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.3■□□□□ 0.52
SDC1-203ENST00000403076 PPIL6Q8IXY8 311 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 PAF1Q8N7H5 531 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 OR6K2Q8NGY2 324 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 FRS2Q8WU20 508 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 FAM153AQ9UHL3 310 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 HCN2Q9UL51 889 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 STON1Q9Y6Q2 735 aa18.3■□□□□ 0.52
SDC1-203ENST00000403076 SHISA7A6NL88 538 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 POP4O95707 220 aaKnown RBP18.29■□□□□ 0.52
SDC1-203ENST00000403076 MT-CYBP00156 380 aaPredicted RBP18.29■□□□□ 0.52
SDC1-203ENST00000403076 CR2P20023 1033 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 TNNT3P45378 269 aaPredicted RBP18.29■□□□□ 0.52
SDC1-203ENST00000403076 CSNK1DP48730 415 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 ITGA8P53708 1063 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 DRG2P55039 364 aaKnown RBP18.29■□□□□ 0.52
SDC1-203ENST00000403076 AP1S1P61966 158 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 UBXN2BQ14CS0 331 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 PCSK7Q16549 785 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 MYLK3Q32MK0 819 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 RALGPS1Q5JS13 557 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 DPY19L3Q6ZPD9 716 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 TRMT11Q7Z4G4 463 aaKnown RBP18.29■□□□□ 0.52
SDC1-203ENST00000403076 PRPF39Q86UA1 669 aaKnown RBP18.29■□□□□ 0.52
SDC1-203ENST00000403076 PDCD7Q8N8D1 485 aaKnown RBP18.29■□□□□ 0.52
SDC1-203ENST00000403076 IPMKQ8NFU5 416 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 KCNV2Q8TDN2 545 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 CPT1BQ92523 772 aa18.29■□□□□ 0.52
SDC1-203ENST00000403076 OXNAD1Q96HP4 312 aaPredicted RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms