RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 SNX10Q9Y5X0 201 aa16.43■□□□□ 0.22
CUX2-202ENST00000397643 H3BM21 787 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 RIOK3O14730 519 aaKnown RBP16.42■□□□□ 0.22
CUX2-202ENST00000397643 TPP1O14773 563 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 DAB1O75553 588 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 ITGB7P26010 798 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 MLLT3P42568 568 aaPredicted RBP16.42■□□□□ 0.22
CUX2-202ENST00000397643 PFN3P60673 137 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 TPM4P67936 248 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 MAPK8IP2Q13387 824 aaPredicted RBP16.42■□□□□ 0.22
CUX2-202ENST00000397643 PDE1CQ14123 709 aaPredicted RBP16.42■□□□□ 0.22
CUX2-202ENST00000397643 EFHC1Q5JVL4 640 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 CCDC81Q6ZN84 652 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 FAM183BPQ6ZVS7 135 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 PARS2Q7L3T8 475 aaKnown RBP16.42■□□□□ 0.22
CUX2-202ENST00000397643 SLC35F3Q8IY50 421 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 RBFAQ8N0V3 343 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 TPCN2Q8NHX9 752 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 WDR36Q8NI36 951 aaKnown RBP16.42■□□□□ 0.22
CUX2-202ENST00000397643 PPP1R16AQ96I34 528 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 SIK2Q9H0K1 926 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 TCEAL2Q9H3H9 227 aaPredicted RBP16.42■□□□□ 0.22
CUX2-202ENST00000397643 CBX8Q9HC52 389 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 PIGVQ9NUD9 493 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 ARHGEF38Q9NXL2 777 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 ZNF212Q9UDV6 495 aa16.42■□□□□ 0.22
CUX2-202ENST00000397643 PNMA8BQ9ULN7 279 aaPredicted RBP16.42■□□□□ 0.22
CUX2-202ENST00000397643 DOCK4Q8N1I0 1966 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 MUSKO15146 869 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 AP1G1O43747 822 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 GCATO75600 419 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 ZMPSTE24O75844 475 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 TNFSF15O95150 251 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 ADCY5O95622 1261 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 ERBB2P04626 1255 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 JUNDP17535 347 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 TFE3P19532 575 aaPredicted RBP16.41■□□□□ 0.22
CUX2-202ENST00000397643 NR0B2Q15466 257 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 SETD3Q86TU7 594 aaPredicted RBP16.41■□□□□ 0.22
CUX2-202ENST00000397643 OR7D4Q8NG98 312 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 LMX1AQ8TE12 382 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 VOPP1Q96AW1 172 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 PPP1R13BQ96KQ4 1090 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 LENG8Q96PV6 779 aaPredicted RBP16.41■□□□□ 0.22
CUX2-202ENST00000397643 C1QTNF2Q9BXJ5 285 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 UBE2TQ9NPD8 197 aaPredicted RBP16.41■□□□□ 0.22
CUX2-202ENST00000397643 COL12A1Q99715 3063 aa16.41■□□□□ 0.22
CUX2-202ENST00000397643 IGLV3-10A0A075B6K4 115 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 CCDC187A0A096LP49 1063 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 DRGXA6NNA5 263 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 GOLGA6L19H0YKK7 550 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 M0QYT0 321 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 ENDOD1O94919 500 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 ITGA2BP08514 1039 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 L1CAMP32004 1257 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 ABL2P42684 1182 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 SERPINH1P50454 418 aaKnown RBP16.4■□□□□ 0.22
CUX2-202ENST00000397643 CSRP3P50461 194 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 MARSP56192 900 aaKnown RBP16.4■□□□□ 0.22
CUX2-202ENST00000397643 IQCB1Q15051 598 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 LINC00303Q3SY05 128 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 GJB7Q6PEY0 223 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 FOXR1Q6PIV2 292 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 SLC26A9Q7LBE3 791 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 PRICKLE2Q7Z3G6 844 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 CREBRFQ8IUR6 639 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 PASD1Q8IV76 773 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 ARL14Q8N4G2 192 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 FEM1CQ96JP0 617 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 CCNL2Q96S94 520 aaPredicted RBP16.4■□□□□ 0.22
CUX2-202ENST00000397643 NPY6RQ99463 290 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 LRRC61Q9BV99 259 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 TKTL2Q9H0I9 626 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 FANCLQ9NW38 375 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 MPP6Q9NZW5 540 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 GGT7Q9UJ14 662 aa16.4■□□□□ 0.22
CUX2-202ENST00000397643 ATXN7L1Q9ULK2 861 aaPredicted RBP16.4■□□□□ 0.22
CUX2-202ENST00000397643 IGLON5A6NGN9 336 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 NTN3O00634 580 aaPredicted RBP16.39■□□□□ 0.21
CUX2-202ENST00000397643 FPGTO14772 594 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 AFPP02771 609 aaKnown RBP16.39■□□□□ 0.21
CUX2-202ENST00000397643 NOS2P35228 1153 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 RECQLP46063 649 aaPredicted RBP16.39■□□□□ 0.21
CUX2-202ENST00000397643 CXCR3P49682 368 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 ARF5P84085 180 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 NCAPHQ15003 741 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 PTPN20Q4JDL3 420 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 BRMS1LQ5PSV4 323 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 C6orf132Q5T0Z8 1188 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 TFAP2DQ7Z6R9 452 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 C1orf131Q8NDD1 294 aaKnown RBP16.39■□□□□ 0.21
CUX2-202ENST00000397643 DENND6BQ8NEG7 585 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 ZNF397Q8NF99 534 aaPredicted RBP16.39■□□□□ 0.21
CUX2-202ENST00000397643 LIN37Q96GY3 246 aaPredicted RBP16.39■□□□□ 0.21
CUX2-202ENST00000397643 IL12RB2Q99665 862 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 CCDC3Q9BQI4 270 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 TRIM4Q9C037 500 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 CEP44Q9C0F1 390 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 TMPRSS4Q9NRS4 437 aa16.39■□□□□ 0.21
CUX2-202ENST00000397643 SAMSN1Q9NSI8 373 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms