RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 E7ESA3 106 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 CASQ2O14958 399 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-203ENST00000395896 DDX3YO15523 660 aaKnown RBP3.43□□□□□ -1.86
VPS13C-203ENST00000395896 SNX3O60493 162 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 ITGA2BP08514 1039 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 AUHQ13825 339 aaKnown RBP3.43□□□□□ -1.86
VPS13C-203ENST00000395896 EFTUD2Q15029 972 aaKnown RBP eCLIP3.43□□□□□ -1.86
VPS13C-203ENST00000395896 EIF4HQ15056 248 aaKnown RBP3.43□□□□□ -1.86
VPS13C-203ENST00000395896 CACHD1Q5VU97 1274 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 GSPT2Q8IYD1 628 aaKnown RBP3.43□□□□□ -1.86
VPS13C-203ENST00000395896 CCDC33Q8N5R6 958 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 CATSPERZQ9NTU4 200 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 HDAC3O15379 428 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 TLL1O43897 1013 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 SUPT7LO94864 414 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 NFATC1O95644 943 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 HNRNPA1P09651 372 aaKnown RBP eCLIP3.43□□□□□ -1.86
VPS13C-203ENST00000395896 OR56A5P0C7T3 313 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 CHRM3P20309 590 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 HMOX2P30519 316 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 NSG1P42857 185 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 PPM1FP49593 454 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-203ENST00000395896 OSBPL1AQ9BXW6 950 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 PCMTD2Q9NV79 361 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 GTSE1Q9NYZ3 720 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 PHTF1Q9UMS5 762 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 RAD51BO15315 384 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 ESR1P03372 595 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 KELP23276 732 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 MARCKSL1P49006 195 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 LIG3P49916 1009 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 SLC25A11Q02978 314 aaKnown RBP3.43□□□□□ -1.86
VPS13C-203ENST00000395896 HIST2H2ACQ16777 129 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-203ENST00000395896 HIST2H2AA3Q6FI13 130 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 CTU1Q7Z7A3 348 aaKnown RBP3.43□□□□□ -1.86
VPS13C-203ENST00000395896 UMODL1-AS1Q8N2C9 162 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 TRIB2Q92519 343 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 ACSF2Q96CM8 615 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-203ENST00000395896 PSKH2Q96QS6 385 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 SLC2A11Q9BYW1 496 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 DCTN4Q9UJW0 460 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 ADAMTSL1Q8N6G6 1762 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 EVPLLA8MZ36 301 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 ADAMTS3O15072 1205 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 EDIL3O43854 480 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 PEX10O60683 326 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 SPAG7O75391 227 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 AMPD1P23109 780 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 CXCR2P25025 360 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 RAB10P61026 200 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 GPR33Q49SQ1 333 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 ATXN3LQ9H3M9 355 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 PHF24Q9UPV7 400 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 PLLPQ9Y342 182 aa3.43□□□□□ -1.86
VPS13C-203ENST00000395896 EIF3FO00303 357 aaPredicted RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 SYNCRIPO60506 623 aaKnown RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 STBD1O95210 358 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 VAPBO95292 243 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 FCGR1AP12314 374 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 TAL1P17542 331 aaPredicted RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 NAA25Q14CX7 972 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 KIF19Q2TAC6 998 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 ARMC2Q8NEN0 867 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 NPLOC4Q8TAT6 608 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 ASZ1Q8WWH4 475 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 FATE1Q969F0 183 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 SYT11Q9BT88 431 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 EPC1Q9H2F5 836 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 WDR41Q9HAD4 459 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 TRMT13Q9NUP7 481 aaKnown RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 KCNE2Q9Y6J6 123 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 ABCA1O95477 2261 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 KIF26BQ2KJY2 2108 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 CXorf51AA0A1B0GTR3 108 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 IFRD1O00458 451 aaPredicted RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 GPR32O75388 356 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 CYP2A7P20853 494 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 IL10P22301 178 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 TPD52P55327 224 aaPredicted RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 WASHC5Q12768 1159 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 ZNF470Q6ECI4 717 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 MSANTD2Q6P1R3 559 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 TAS1R3Q7RTX0 852 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 CMTR2Q8IYT2 770 aaKnown RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 CD99L2Q8TCZ2 262 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 PBXIP1Q96AQ6 731 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 C7orf26Q96N11 449 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 FAM111AQ96PZ2 611 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 MRPL45Q9BRJ2 306 aaKnown RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 MRM3Q9HC36 420 aaKnown RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 ZDHHC18Q9NUE0 388 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 INTS10Q9NVR2 710 aaKnown RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 SPACA6W5XKT8 324 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 MYO18BQ8IUG5 2567 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 SRP72O76094 671 aaKnown RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 OGNP20774 298 aaKnown RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 GALNT2Q10471 571 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 FRG1Q14331 258 aaKnown RBP3.42□□□□□ -1.86
VPS13C-203ENST00000395896 CRYMQ14894 314 aa3.42□□□□□ -1.86
VPS13C-203ENST00000395896 PAGE2BQ5JRK9 111 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms