RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 PCDH20Q8N6Y1 951 aaKnown RBP12.87□□□□□ -0.35
SHMT1-205ENST00000395684 DRAXINQ8NBI3 349 aaPredicted RBP12.87□□□□□ -0.35
SHMT1-205ENST00000395684 ARRDC4Q8NCT1 418 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 USP33Q8TEY7 942 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 STON2Q8WXE9 905 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 ATP6V1E2Q96A05 226 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 SGF29Q96ES7 293 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 BRD8Q9H0E9 1235 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 VTA1Q9NP79 307 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 ATXN10Q9UBB4 475 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 OR12D3Q9UGF7 316 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 SBF1O95248 1867 aa12.87□□□□□ -0.35
SHMT1-205ENST00000395684 MT-CYBP00156 380 aaPredicted RBP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 MMP3P08254 477 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 USP17L7P0C7H9 530 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 FAM58BPP0C7Q3 252 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 KCNE1P15382 129 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 ARNTP27540 789 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 RAB10P61026 200 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 PTK2BQ14289 1009 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 POU6F1Q14863 301 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 EML3Q32P44 896 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 USP41Q3LFD5 358 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 XKR4Q5GH76 650 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 INTS6LQ5JSJ4 861 aaKnown RBP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 SH2D4BQ5SQS7 431 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 NAPEPLDQ6IQ20 393 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 B3GNT6Q6ZMB0 384 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 EGFL6Q8IUX8 553 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 TXNDC5Q8NBS9 432 aaKnown RBP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 VAT1Q99536 393 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 COLEC11Q9BWP8 271 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 SLC2A11Q9BYW1 496 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 PCDHAC1Q9H158 963 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 PLK2Q9NYY3 685 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 ADA2Q9NZK5 511 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 PIN4Q9Y237 131 aaKnown RBP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 PCDHGA7Q9Y5G6 932 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 C7orf72A4D263 438 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 NEMP2A6NFY4 417 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 CCDC160A6NGH7 325 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 LRIG2O94898 1065 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 SNAI1O95863 264 aaPredicted RBP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 COL6A2P12110 1019 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 HNRNPLP14866 589 aaKnown RBP eCLIP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 SMPD1P17405 629 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 ARCN1P48444 511 aaKnown RBP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 SH3BGRP55822 239 aaPredicted RBP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 CREB5Q02930 508 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 APOFQ13790 326 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 MGAT5BQ3V5L5 792 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 ESRP1Q6NXG1 681 aaKnown RBP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 PKN3Q6P5Z2 889 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 CNSTQ6PJW8 725 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 ARHGAP36Q6ZRI8 547 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 PTAR1Q7Z6K3 402 aaPredicted RBP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 TOP6BLQ8N6T0 577 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 HMGCLL1Q8TB92 370 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 EDEM1Q92611 657 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 ZNF419Q96HQ0 510 aaPredicted RBP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 ZFRQ96KR1 1074 aaKnown RBP12.86□□□□□ -0.35
SHMT1-205ENST00000395684 DNAI2Q9GZS0 605 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 CRTAC1Q9NQ79 661 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 NSMCE4AQ9NXX6 385 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 HSFX1Q9UBD0 423 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 CACNG4Q9UBN1 327 aa12.86□□□□□ -0.35
SHMT1-205ENST00000395684 FAM95CA0A1B0GW59 222 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 ZNF189O75820 626 aaPredicted RBP12.85□□□□□ -0.35
SHMT1-205ENST00000395684 FAM200BP0CF97 657 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 HSPA1AP0DMV8 641 aaKnown RBP12.85□□□□□ -0.35
SHMT1-205ENST00000395684 HSPA1BP0DMV9 641 aaKnown RBP12.85□□□□□ -0.35
SHMT1-205ENST00000395684 NRF1Q16656 503 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 UBXN11Q5T124 520 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 ZNF280DQ6N043 979 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 LCA5Q86VQ0 697 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 CNTN4Q8IWV2 1026 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 ANKRD13AQ8IZ07 590 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 PELI3Q8N2H9 469 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 ZMIZ2Q8NF64 920 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 CEP70Q8NHQ1 597 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 SMOQ99835 787 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 TKTL2Q9H0I9 626 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 OSBPL2Q9H1P3 480 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 SEMA6AQ9H2E6 1030 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 TNFRSF12AQ9NP84 129 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 DDX18Q9NVP1 670 aaKnown RBP12.85□□□□□ -0.35
SHMT1-205ENST00000395684 SLC2A6Q9UGQ3 507 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 C9IYK1 514 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 E7ENX8 843 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 TRIM38O00635 465 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 GABRDO14764 452 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 TRPA1O75762 1119 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 STMN1P16949 149 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 HDCP19113 662 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 GJA9P57773 515 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 TAS2R39P59534 338 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 PSME3P61289 254 aa12.85□□□□□ -0.35
SHMT1-205ENST00000395684 TRIM25Q14258 630 aaKnown RBP12.85□□□□□ -0.35
SHMT1-205ENST00000395684 PRPSAP1Q14558 356 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms