RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 ATP6V0D2Q8N8Y2 350 aa21.83■■□□□ 1.08
TRIM54-202ENST00000380075 SP7Q8TDD2 431 aaPredicted RBP21.83■■□□□ 1.08
TRIM54-202ENST00000380075 MCUR1Q96AQ8 359 aa21.83■■□□□ 1.08
TRIM54-202ENST00000380075 TSNARE1Q96NA8 513 aa21.83■■□□□ 1.08
TRIM54-202ENST00000380075 FICDQ9BVA6 458 aa21.83■■□□□ 1.08
TRIM54-202ENST00000380075 OSER1Q9NX31 292 aa21.83■■□□□ 1.08
TRIM54-202ENST00000380075 TAS2R1Q9NYW7 299 aa21.83■■□□□ 1.08
TRIM54-202ENST00000380075 CLIC5Q9NZA1 410 aa21.83■■□□□ 1.08
TRIM54-202ENST00000380075 TAGLN3Q9UI15 199 aa21.83■■□□□ 1.08
TRIM54-202ENST00000380075 IPO11Q9UI26 975 aaKnown RBP21.83■■□□□ 1.08
TRIM54-202ENST00000380075 L3MBTL1Q9Y468 752 aa21.83■■□□□ 1.08
TRIM54-202ENST00000380075 TCAF1Q9Y4C2 921 aa21.83■■□□□ 1.08
TRIM54-202ENST00000380075 SHROOM3Q8TF72 1996 aa21.83■■□□□ 1.08
TRIM54-202ENST00000380075 CDH23Q9H251 3354 aa21.83■■□□□ 1.08
TRIM54-202ENST00000380075 FNDC1Q4ZHG4 1894 aaPredicted RBP21.82■■□□□ 1.08
TRIM54-202ENST00000380075 MYO16Q9Y6X6 1858 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 CHD9Q3L8U1 2897 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 SIN3BO75182 1162 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 ANP32DO95626 131 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 MT-CYBP00156 380 aaPredicted RBP21.82■■□□□ 1.08
TRIM54-202ENST00000380075 HLA-DQB2P05538 268 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 COL6A2P12110 1019 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 PAPOLAP51003 745 aaKnown RBP21.82■■□□□ 1.08
TRIM54-202ENST00000380075 MTA1Q13330 715 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 MRPL58Q14197 206 aaKnown RBP21.82■■□□□ 1.08
TRIM54-202ENST00000380075 SMAD1Q15797 465 aaKnown RBP21.82■■□□□ 1.08
TRIM54-202ENST00000380075 PIK3R6Q5UE93 754 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 ZNF280DQ6N043 979 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 TMPRSS6Q8IU80 811 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 TEX9Q8N6V9 391 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 ENDOVQ8N8Q3 282 aaKnown RBP21.82■■□□□ 1.08
TRIM54-202ENST00000380075 AZIN2Q96A70 460 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 ATXN7L3BQ96GX2 97 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 ANKRD27Q96NW4 1050 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 CCDC106Q9BWC9 280 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 FSD1LQ9BXM9 530 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 NMRAL1Q9HBL8 299 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 COMMD8Q9NX08 183 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 TLK1Q9UKI8 766 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 PRG3Q9Y2Y8 225 aaPredicted RBP21.82■■□□□ 1.08
TRIM54-202ENST00000380075 PCDHB12Q9Y5F1 795 aa21.82■■□□□ 1.08
TRIM54-202ENST00000380075 MRPL42Q9Y6G3 142 aaKnown RBP21.82■■□□□ 1.08
TRIM54-202ENST00000380075 PEX11AO75192 247 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 RTN3O95197 1032 aaPredicted RBP21.81■■□□□ 1.08
TRIM54-202ENST00000380075 RENBPP51606 427 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 CCNG1P51959 295 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 CTXN3Q4LDR2 81 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 C14orf80Q86SX3 495 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 ZNF683Q8IZ20 524 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 ZNF778Q96MU6 729 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 SORT1Q99523 831 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 ZYG11BQ9C0D3 744 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 NDFIP2Q9NV92 336 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 TMEM248Q9NWD8 314 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 ARMCX1Q9P291 453 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 MAGED2Q9UNF1 606 aaPredicted RBP21.81■■□□□ 1.08
TRIM54-202ENST00000380075 APOBEC2Q9Y235 224 aaKnown RBP21.81■■□□□ 1.08
TRIM54-202ENST00000380075 CDY1Q9Y6F8 540 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 NUP205Q92621 2012 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 LYPLA1O75608 230 aaPredicted RBP21.81■■□□□ 1.08
TRIM54-202ENST00000380075 KLHL2O95198 593 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 AOC1P19801 751 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 SMAD3P84022 425 aaKnown RBP21.81■■□□□ 1.08
TRIM54-202ENST00000380075 SMARCB1Q12824 385 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 DDR2Q16832 855 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 RANBP10Q6VN20 620 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 RINLQ6ZS11 566 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 PLD6Q8N2A8 252 aaKnown RBP21.81■■□□□ 1.08
TRIM54-202ENST00000380075 LRRC43Q8N309 656 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 FIBCD1Q8N539 461 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 ZNF419Q96HQ0 510 aaPredicted RBP21.81■■□□□ 1.08
TRIM54-202ENST00000380075 MRPL9Q9BYD2 267 aaKnown RBP21.81■■□□□ 1.08
TRIM54-202ENST00000380075 SLC25A51Q9H1U9 297 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 DENND2DQ9H6A0 471 aaPredicted RBP21.81■■□□□ 1.08
TRIM54-202ENST00000380075 MPP6Q9NZW5 540 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 MSRAQ9UJ68 235 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 NUDT5Q9UKK9 219 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 C15orf41Q9Y2V0 281 aa21.81■■□□□ 1.08
TRIM54-202ENST00000380075 SPECC1L-ADORA2AF8WAN1 911 aa21.8■■□□□ 1.08
TRIM54-202ENST00000380075 YWHAQP27348 245 aa21.8■■□□□ 1.08
TRIM54-202ENST00000380075 ITGA9Q13797 1035 aa21.8■■□□□ 1.08
TRIM54-202ENST00000380075 TRIP4Q15650 581 aaPredicted RBP21.8■■□□□ 1.08
TRIM54-202ENST00000380075 KIAA0930Q6ICG6 404 aaPredicted RBP21.8■■□□□ 1.08
TRIM54-202ENST00000380075 SPRED2Q7Z698 418 aa21.8■■□□□ 1.08
TRIM54-202ENST00000380075 GABPB2Q8TAK5 448 aaPredicted RBP21.8■■□□□ 1.08
TRIM54-202ENST00000380075 BTN2A3PQ96KV6 586 aa21.8■■□□□ 1.08
TRIM54-202ENST00000380075 NKX2-4Q9H2Z4 354 aa21.8■■□□□ 1.08
TRIM54-202ENST00000380075 CWH43Q9H720 699 aa21.8■■□□□ 1.08
TRIM54-202ENST00000380075 ARNT2Q9HBZ2 717 aa21.8■■□□□ 1.08
TRIM54-202ENST00000380075 GMIPQ9P107 970 aa21.8■■□□□ 1.08
TRIM54-202ENST00000380075 DNAJB4Q9UDY4 337 aa21.8■■□□□ 1.08
TRIM54-202ENST00000380075 CHD7Q9P2D1 2997 aa21.8■■□□□ 1.08
TRIM54-202ENST00000380075 IGLV3-10A0A075B6K4 115 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 LINC01553A4QN01 128 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 MAGEC1O60732 1142 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 TRIM13O60858 407 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 TNK2Q07912 1038 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 GRM3Q14832 879 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 RAB30Q15771 203 aa21.79■■□□□ 1.08
TRIM54-202ENST00000380075 DNAL1Q4LDG9 190 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms