RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 EPHB2P29323 1055 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 CCR2P41597 374 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 PDE1BQ01064 536 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 TAF12Q16514 161 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 SLC5A9Q2M3M2 681 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 SPANXN3Q5MJ09 141 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 CRLF3Q8IUI8 442 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 OR52K1Q8NGK4 314 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 PPP1R14CQ8TAE6 165 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 TCEAL4Q96EI5 215 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 NECTIN4Q96NY8 510 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 TKTL2Q9H0I9 626 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 ZNF334Q9HCZ1 680 aaPredicted RBP15.79■□□□□ 0.12
CCDC40-202ENST00000374876 KCNK4Q9NYG8 393 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 OR12D3Q9UGF7 316 aa15.79■□□□□ 0.12
CCDC40-202ENST00000374876 TPP1O14773 563 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 AP2A1O95782 977 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 ALDOAP04075 364 aaKnown RBP15.78■□□□□ 0.12
CCDC40-202ENST00000374876 SERPINB6P35237 376 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 ZNF135P52742 658 aaPredicted RBP15.78■□□□□ 0.12
CCDC40-202ENST00000374876 OCRLQ01968 901 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 VEPH1Q14D04 833 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 TEX44Q53QW1 395 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 STXBP5Q5T5C0 1151 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 ARID3BQ8IVW6 561 aaPredicted RBP15.78■□□□□ 0.12
CCDC40-202ENST00000374876 NPWQ8N729 165 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 DNAAF3Q8N9W5 541 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 ING5Q8WYH8 240 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 IRGQQ8WZA9 623 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 RNF34Q969K3 372 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 NSL1Q96IY1 281 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 LRRC3Q9BY71 257 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 LRRC40Q9H9A6 602 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 CSNK1G1Q9HCP0 422 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 FAM50BQ9Y247 325 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 PSAT1Q9Y617 370 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 MYO18AQ92614 2054 aaKnown RBP15.78■□□□□ 0.12
CCDC40-202ENST00000374876 SLC38A8A6NNN8 435 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 CCDC22O60826 627 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 GLRA3O75311 464 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 TOP3BO95985 862 aaKnown RBP15.78■□□□□ 0.12
CCDC40-202ENST00000374876 ITGA2BP08514 1039 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 POU2F2P09086 479 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 ERVK-10P10266 1014 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 HMGA1P17096 107 aaKnown RBP15.78■□□□□ 0.12
CCDC40-202ENST00000374876 CXCR3P49682 368 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 USP46P62068 366 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 IRX4P78413 519 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 STX3Q13277 289 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 SMAD1Q15797 465 aaKnown RBP15.78■□□□□ 0.12
CCDC40-202ENST00000374876 CES3Q6UWW8 571 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 GET4Q7L5D6 327 aaPredicted RBP15.78■□□□□ 0.12
CCDC40-202ENST00000374876 BHLHA9Q7RTU4 235 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 ITIH5Q86UX2 942 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 ST13P5Q8NFI4 369 aaPredicted RBP15.78■□□□□ 0.12
CCDC40-202ENST00000374876 CERS2Q96G23 380 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 C8orf48Q96LL4 319 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 PHF7Q9BWX1 381 aaPredicted RBP15.78■□□□□ 0.12
CCDC40-202ENST00000374876 ASAH2Q9NR71 780 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 ARL8BQ9NVJ2 186 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 NOP53Q9NZM5 478 aaKnown RBP15.78■□□□□ 0.12
CCDC40-202ENST00000374876 BFARQ9NZS9 450 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 TRHDEQ9UKU6 1024 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 VANGL2Q9ULK5 521 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 ASB3Q9Y575 518 aa15.78■□□□□ 0.12
CCDC40-202ENST00000374876 ZBTB24O43167 697 aaPredicted RBP15.77■□□□□ 0.12
CCDC40-202ENST00000374876 USP12O75317 370 aa15.77■□□□□ 0.12
CCDC40-202ENST00000374876 FSHRP23945 695 aa15.77■□□□□ 0.12
CCDC40-202ENST00000374876 GARSP41250 739 aaKnown RBP15.77■□□□□ 0.12
CCDC40-202ENST00000374876 OLIG2Q13516 323 aa15.77■□□□□ 0.12
CCDC40-202ENST00000374876 PDE1CQ14123 709 aaPredicted RBP15.77■□□□□ 0.12
CCDC40-202ENST00000374876 DBN1Q16643 649 aa15.77■□□□□ 0.12
CCDC40-202ENST00000374876 ITPRIPL1Q6GPH6 555 aa15.77■□□□□ 0.12
CCDC40-202ENST00000374876 TMC8Q8IU68 726 aa15.77■□□□□ 0.12
CCDC40-202ENST00000374876 FAM13CQ8NE31 585 aa15.77■□□□□ 0.12
CCDC40-202ENST00000374876 HDAC11Q96DB2 347 aa15.77■□□□□ 0.12
CCDC40-202ENST00000374876 PTCD3Q96EY7 689 aaKnown RBP15.77■□□□□ 0.12
CCDC40-202ENST00000374876 NECAB3Q96P71 396 aaPredicted RBP15.77■□□□□ 0.12
CCDC40-202ENST00000374876 GBA3Q9H227 469 aa15.77■□□□□ 0.12
CCDC40-202ENST00000374876 IL1RAPL1Q9NZN1 696 aa15.77■□□□□ 0.12
CCDC40-202ENST00000374876 DCDC2Q9UHG0 476 aa15.77■□□□□ 0.12
CCDC40-202ENST00000374876 MRPS23Q9Y3D9 190 aaKnown RBP15.77■□□□□ 0.12
CCDC40-202ENST00000374876 SNX10Q9Y5X0 201 aa15.77■□□□□ 0.12
CCDC40-202ENST00000374876 ZNF638Q14966 1978 aaKnown RBP15.77■□□□□ 0.11
CCDC40-202ENST00000374876 ERI2A8K979 691 aaKnown RBP15.77■□□□□ 0.11
CCDC40-202ENST00000374876 FCHO1O14526 889 aa15.77■□□□□ 0.11
CCDC40-202ENST00000374876 SNNO75324 88 aaPredicted RBP15.77■□□□□ 0.11
CCDC40-202ENST00000374876 ANP32DO95626 131 aa15.77■□□□□ 0.11
CCDC40-202ENST00000374876 CALB2P22676 271 aa15.77■□□□□ 0.11
CCDC40-202ENST00000374876 GP5P40197 560 aa15.77■□□□□ 0.11
CCDC40-202ENST00000374876 GALNT2Q10471 571 aa15.77■□□□□ 0.11
CCDC40-202ENST00000374876 KRT72Q14CN4 511 aa15.77■□□□□ 0.11
CCDC40-202ENST00000374876 FASTKD1Q53R41 847 aaKnown RBP15.77■□□□□ 0.11
CCDC40-202ENST00000374876 TJAP1Q5JTD0 557 aa15.77■□□□□ 0.11
CCDC40-202ENST00000374876 N4BP2L1Q5TBK1 243 aaPredicted RBP15.77■□□□□ 0.11
CCDC40-202ENST00000374876 CES4AQ5XG92 561 aa15.77■□□□□ 0.11
CCDC40-202ENST00000374876 PM20D1Q6GTS8 502 aa15.77■□□□□ 0.11
CCDC40-202ENST00000374876 POTEHQ6S545 545 aa15.77■□□□□ 0.11
CCDC40-202ENST00000374876 GAREM2Q75VX8 874 aa15.77■□□□□ 0.11
CCDC40-202ENST00000374876 TAC4Q86UU9 113 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms