RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 DNA2P51530 1060 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 GPC3P51654 580 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 HNRNPH2P55795 449 aaKnown RBP5.05□□□□□ -1.6
USP48-202ENST00000374730 PEX3P56589 373 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 POU5F1Q01860 360 aaKnown RBP5.05□□□□□ -1.6
USP48-202ENST00000374730 GUCY2DQ02846 1103 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 DMP1Q13316 513 aaPredicted RBP5.05□□□□□ -1.6
USP48-202ENST00000374730 BAATQ14032 418 aaPredicted RBP5.05□□□□□ -1.6
USP48-202ENST00000374730 PLS1Q14651 629 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 ZNF169Q14929 603 aaPredicted RBP5.05□□□□□ -1.6
USP48-202ENST00000374730 SNRNP35Q16560 246 aaKnown RBP5.05□□□□□ -1.6
USP48-202ENST00000374730 CCDC142Q17RM4 750 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 PABPC1LQ4VXU2 614 aaKnown RBP5.05□□□□□ -1.6
USP48-202ENST00000374730 XKR9Q5GH70 373 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 SPDYCQ5MJ68 293 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 CFAP58Q5T655 872 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 EMC10Q5UCC4 262 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 ARHGEF16Q5VV41 709 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 PLA2G4FQ68DD2 849 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 KRT39Q6A163 491 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 LRIG3Q6UXM1 1119 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 ANO5Q75V66 913 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 OTUD6AQ7L8S5 288 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 DAAM2Q86T65 1068 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 USP37Q86T82 979 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 RSPH3Q86UC2 560 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 EFCAB13Q8IY85 973 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 FAM71AQ8IYT1 594 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 PPM1NQ8N819 430 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 MCPH1Q8NEM0 835 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 CCDC26Q8TAB7 109 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 SLC35G2Q8TBE7 412 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 TBC1D15Q8TC07 691 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 IFI44Q8TCB0 444 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 NSUN6Q8TEA1 469 aaKnown RBP5.05□□□□□ -1.6
USP48-202ENST00000374730 SHC3Q92529 594 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 NELL1Q92832 810 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 ATP6V0A1Q93050 837 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 LRRC45Q96CN5 670 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 ARHGEF26Q96DR7 871 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 FAM81BQ96LP2 452 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 GDAP1L1Q96MZ0 367 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 ZIM3Q96PE6 472 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 RUFY1Q96T51 708 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 NAP1L3Q99457 506 aaPredicted RBP5.05□□□□□ -1.6
USP48-202ENST00000374730 NTPCRQ9BSD7 190 aaKnown RBP5.05□□□□□ -1.6
USP48-202ENST00000374730 TMEM117Q9H0C3 514 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 R3HDMLQ9H3Y0 253 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 GOLPH3Q9H4A6 298 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 TMEM8AQ9HCN3 771 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 UBE2TQ9NPD8 197 aaPredicted RBP5.05□□□□□ -1.6
USP48-202ENST00000374730 CASS4Q9NQ75 786 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 TDP1Q9NUW8 608 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 GOLGA6AQ9NYA3 693 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 HSFX1Q9UBD0 423 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 HACL1Q9UJ83 578 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 NOCTQ9UK39 431 aaKnown RBP5.05□□□□□ -1.6
USP48-202ENST00000374730 TBX20Q9UMR3 447 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 NFU1Q9UMS0 254 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 DMTF1Q9Y222 760 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 ANK1P16157 1881 aa5.05□□□□□ -1.6
USP48-202ENST00000374730 GOLGA6L10A0A0M3HER8 536 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 DENND3A2RUS2 1198 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 KLHL33A6NCF5 533 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 ZSCAN5CA6NGD5 496 aaPredicted RBP5.04□□□□□ -1.6
USP48-202ENST00000374730 SRRM3A6NNA2 597 aaPredicted RBP5.04□□□□□ -1.6
USP48-202ENST00000374730 FZD9O00144 591 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 SLC16A4O15374 487 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 ZC3H11AO75152 810 aaKnown RBP eCLIP5.04□□□□□ -1.6
USP48-202ENST00000374730 RTN2O75298 545 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 PIGRP01833 764 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 CHRNB2P17787 502 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 CD38P28907 300 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 ADSSP30520 456 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 ICAM3P32942 547 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 NPTX2P47972 431 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 GCLMP48507 274 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 RAB27AP51159 221 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 MFAP3P55082 362 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 ELLP55199 621 aaPredicted RBP5.04□□□□□ -1.6
USP48-202ENST00000374730 PTENP60484 403 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 GPC5P78333 572 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 MRPS25P82663 173 aaKnown RBP5.04□□□□□ -1.6
USP48-202ENST00000374730 GCNT1Q02742 428 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 CYP24A1Q07973 514 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 DHX34Q14147 1143 aaKnown RBP5.04□□□□□ -1.6
USP48-202ENST00000374730 RAB39AQ14964 217 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 TTMPQ5BVD1 217 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 FAM102BQ5T8I3 360 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 DCAF12L1Q5VU92 463 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 SP5Q6BEB4 398 aaPredicted RBP5.04□□□□□ -1.6
USP48-202ENST00000374730 SNRNP48Q6IEG0 339 aaKnown RBP5.04□□□□□ -1.6
USP48-202ENST00000374730 ENOSF1Q7L5Y1 443 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 MAEAQ7L5Y9 396 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 RD3Q7Z3Z2 195 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 MAATS1Q7Z4T9 603 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 DNAAF5Q86Y56 855 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 PALB2Q86YC2 1186 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 CBWD2Q8IUF1 395 aa5.04□□□□□ -1.6
USP48-202ENST00000374730 KLHL7Q8IXQ5 586 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms