RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 TMEM109Q9BVC6 243 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 PRDM12Q9H4Q4 367 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 SPAG4Q9NPE6 437 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 SPG21Q9NZD8 308 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 DNMT3LQ9UJW3 386 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.87□□□□□ -0.51
COL9A1-202ENST00000357250 SMIM31A0A1B0GVY4 71 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 SNAP91O60641 907 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 STX11O75558 287 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 COX4I1P13073 169 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 CHKAP35790 457 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 SGCGQ13326 291 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 BTG3Q14201 252 aaPredicted RBP11.87□□□□□ -0.51
COL9A1-202ENST00000357250 RFX4Q33E94 735 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 OTUD3Q5T2D3 398 aaPredicted RBP11.87□□□□□ -0.51
COL9A1-202ENST00000357250 LIPMQ5VYY2 423 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 WSCD1Q658N2 575 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 CDC73Q6P1J9 531 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 IL27RAQ6UWB1 636 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 ZCCHC23Q6ZST2 131 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 SYT12Q8IV01 421 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 C8orf59Q8N0T1 100 aaPredicted RBP11.87□□□□□ -0.51
COL9A1-202ENST00000357250 PPP1R16AQ96I34 528 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 ADAM2Q99965 735 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 CCDC3Q9BQI4 270 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 MLPHQ9BV36 600 aaPredicted RBP11.87□□□□□ -0.51
COL9A1-202ENST00000357250 OSBPL10Q9BXB5 764 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 ACE2Q9BYF1 805 aaPredicted RBP11.87□□□□□ -0.51
COL9A1-202ENST00000357250 ARL15Q9NXU5 204 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 VAV3Q9UKW4 847 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 COL1A1P02452 1464 aaPredicted RBP11.87□□□□□ -0.51
COL9A1-202ENST00000357250 NID2Q14112 1375 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 MT-CO1P00395 513 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 FGF1P05230 155 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 CSH1P0DML2 217 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 CSH2P0DML3 217 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 MYL12AP19105 171 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 PAICSP22234 425 aaKnown RBP11.87□□□□□ -0.51
COL9A1-202ENST00000357250 PBLDP30039 288 aaPredicted RBP11.87□□□□□ -0.51
COL9A1-202ENST00000357250 CRYBB1P53674 252 aaPredicted RBP11.87□□□□□ -0.51
COL9A1-202ENST00000357250 MRPS6P82932 125 aaKnown RBP11.87□□□□□ -0.51
COL9A1-202ENST00000357250 BOP1Q14137 746 aaKnown RBP11.87□□□□□ -0.51
COL9A1-202ENST00000357250 ARMC4Q5T2S8 1044 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 TRPC4APQ8TEL6 797 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 TBC1D10AQ9BXI6 508 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 ZCWPW1Q9H0M4 648 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 HMG20AQ9NP66 347 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 PSME2Q9UL46 239 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 UBXN8O00124 270 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 TGDSO95455 350 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 ITGA2BP08514 1039 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 NFKB1P19838 968 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 TPSB2P20231 275 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 MMP8P22894 467 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 FMO4P31512 558 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 SMIM11AP58511 58 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 TPSAB1Q15661 275 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 CES3Q6UWW8 571 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 ADAM32Q8TC27 787 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 C3orf18Q9UK00 162 aa11.87□□□□□ -0.51
COL9A1-202ENST00000357250 H7C0S8 307 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 ZW10O43264 779 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 HS6ST1O60243 411 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 MAGEC1O60732 1142 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 EDF1O60869 148 aaKnown RBP11.86□□□□□ -0.51
COL9A1-202ENST00000357250 SHBGP04278 402 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 ZNF605Q86T29 641 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 ZNF276Q8N554 614 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 PTCD2Q8WV60 388 aaKnown RBP11.86□□□□□ -0.51
COL9A1-202ENST00000357250 CYLDQ9NQC7 956 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 BTBD7Q9P203 1132 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 ZNF541Q9H0D2 1346 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 SLC28A1O00337 649 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 CCDC166P0CW27 439 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 CENPAP49450 140 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 MRPS5P82675 430 aaKnown RBP11.86□□□□□ -0.51
COL9A1-202ENST00000357250 IRF8Q02556 426 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 FGD2Q7Z6J4 655 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 MIEF2Q96C03 454 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 CCDC28BQ9BUN5 200 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 C1orf50Q9BV19 199 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 SYNDIG1Q9H7V2 258 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 CRYL1Q9Y2S2 319 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 MEI4A8MW99 385 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 ABLIM1O14639 778 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 PPIBP23284 216 aaKnown RBP11.86□□□□□ -0.51
COL9A1-202ENST00000357250 CHN2P52757 468 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 PSME3P61289 254 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 BEX3Q00994 111 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 SLC20A2Q08357 652 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 PLCL1Q15111 1095 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 INTS6LQ5JSJ4 861 aaKnown RBP11.86□□□□□ -0.51
COL9A1-202ENST00000357250 SPANXN2Q5MJ10 180 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 AADACL2Q6P093 401 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 CLVS1Q8IUQ0 354 aaPredicted RBP11.86□□□□□ -0.51
COL9A1-202ENST00000357250 KIAA0319LQ8IZA0 1049 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 NKD2Q969F2 451 aaPredicted RBP11.86□□□□□ -0.51
COL9A1-202ENST00000357250 MED8Q96G25 268 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 BBS4Q96RK4 519 aa11.86□□□□□ -0.51
COL9A1-202ENST00000357250 SPATA5L1Q9BVQ7 753 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms