RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 DRD1P21728 446 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 BCKDHBP21953 392 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 GABRB2P47870 512 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 LHX1P48742 406 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 RPL34P49207 117 aaKnown RBP7.21□□□□□ -1.26
VPS13A-201ENST00000355766 DHPSP49366 369 aaPredicted RBP7.21□□□□□ -1.26
VPS13A-201ENST00000355766 DGKEP52429 567 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 DUSP4Q13115 394 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 MAMLD1Q13495 774 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 PIGHQ14442 188 aaPredicted RBP7.21□□□□□ -1.26
VPS13A-201ENST00000355766 ARHGAP15Q53QZ3 475 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 GPR158Q5T848 1215 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 CCDC181Q5TID7 509 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 TAF3Q5VWG9 929 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 NAA35Q5VZE5 725 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 WDR93Q6P2C0 686 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 GAREM2Q75VX8 874 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 POLNQ7Z5Q5 900 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 VSIG1Q86XK7 387 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 PDCL2Q8N4E4 241 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 MMGT1Q8N4V1 131 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 C1orf131Q8NDD1 294 aaKnown RBP7.21□□□□□ -1.26
VPS13A-201ENST00000355766 APPL2Q8NEU8 664 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 CD101Q93033 1021 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 RUNDC3BQ96NL0 473 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 ZSWIM1Q9BR11 485 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 CARD6Q9BX69 1037 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 NUSAP1Q9BXS6 441 aaKnown RBP7.21□□□□□ -1.26
VPS13A-201ENST00000355766 TPSD1Q9BZJ3 242 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 ZNF552Q9H707 407 aaPredicted RBP7.21□□□□□ -1.26
VPS13A-201ENST00000355766 HPS4Q9NQG7 708 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.21□□□□□ -1.26
VPS13A-201ENST00000355766 THG1LQ9NWX6 298 aaKnown RBP7.21□□□□□ -1.26
VPS13A-201ENST00000355766 CNOT8Q9UFF9 292 aaKnown RBP7.21□□□□□ -1.26
VPS13A-201ENST00000355766 TUBGCP4Q9UGJ1 667 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 IP6K2Q9UHH9 426 aa7.21□□□□□ -1.26
VPS13A-201ENST00000355766 EML5Q05BV3 1969 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 SPAG17Q6Q759 2223 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 CELSR3Q9NYQ7 3312 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 NUP210Q8TEM1 1887 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-201ENST00000355766 GOLGA6L10A0A0M3HER8 536 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 TCRBV5S1A1TA0A578 114 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 CCDC151A5D8V7 595 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 OTOL1A6NHN0 477 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-201ENST00000355766 SLC22A31A6NKX4 558 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 GABRDO14764 452 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 PROSCO94903 275 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 UBOX5O94941 541 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 CD58P19256 250 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 TYMPP19971 482 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 RRM1P23921 792 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 GABRR2P28476 465 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 TNFRSF8P28908 595 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 PCSK1P29120 753 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 PTPN7P35236 360 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 ACADSBP45954 432 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 NDST1P52848 882 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 BCAT1P54687 386 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 EPHB3P54753 998 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 SLC8A3P57103 927 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 LILRA4P59901 499 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 FAM193AP78312 1265 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 CYP4F8P98187 520 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 PDCLQ13371 301 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 RUNX3Q13761 415 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 HNRNPDQ14103 355 aaKnown RBP7.2□□□□□ -1.26
VPS13A-201ENST00000355766 ZNF268Q14587 947 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-201ENST00000355766 BRD3Q15059 726 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 MAPRE1Q15691 268 aaKnown RBP7.2□□□□□ -1.26
VPS13A-201ENST00000355766 SOWAHAQ2M3V2 549 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 USP39Q53GS9 565 aaKnown RBP7.2□□□□□ -1.26
VPS13A-201ENST00000355766 DNAJC24Q6P3W2 148 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 SCARA5Q6ZMJ2 495 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 RASSF3Q86WH2 238 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 ADGRF2Q8IZF7 708 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 SPATA4Q8NEY3 305 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 TSTD1Q8NFU3 115 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 HNRNPLLQ8WVV9 542 aaKnown RBP7.2□□□□□ -1.26
VPS13A-201ENST00000355766 KBTBD7Q8WVZ9 684 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 MAIP1Q8WWC4 291 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 PIGKQ92643 395 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 PSMG2Q969U7 264 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 ARHGEF26Q96DR7 871 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 CYFIP2Q96F07 1278 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 LRIG1Q96JA1 1093 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 HSFY1Q96LI6 401 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 MMS19Q96T76 1030 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 FAM129AQ9BZQ8 928 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 ELOVL4Q9GZR5 314 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 SDCBP2Q9H190 292 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 FBRSL1Q9HCM7 1045 aaKnown RBP7.2□□□□□ -1.26
VPS13A-201ENST00000355766 HESX1Q9UBX0 185 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 RAB21Q9UL25 225 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 TFR2Q9UP52 801 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 INVSQ9Y283 1065 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 PCDHA3Q9Y5H8 950 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 SNX9Q9Y5X1 595 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 ALG6Q9Y672 507 aa7.2□□□□□ -1.26
VPS13A-201ENST00000355766 ATXN2Q99700 1313 aaKnown RBP7.2□□□□□ -1.26
VPS13A-201ENST00000355766 SCN1AP35498 2009 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms