RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ARSAP15289 507 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 INHBEP58166 350 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 ARL13AQ5H913 290 aaPredicted RBP10.47□□□□□ -0.73
LIMA1-201ENST00000341247 BRMS1LQ5PSV4 323 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 TCHHL1Q5QJ38 904 aaPredicted RBP10.47□□□□□ -0.73
LIMA1-201ENST00000341247 RABGAP1LQ5R372 815 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 TMEM198Q66K66 360 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 NUP93Q8N1F7 819 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 ARHGAP24Q8N264 748 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 IGSF8Q969P0 613 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 FBXO32Q969P5 355 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 FCRL5Q96RD9 977 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 GPR62Q9BZJ7 368 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 RHOJQ9H4E5 214 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 NOL6Q9H6R4 1146 aaKnown RBP10.47□□□□□ -0.73
LIMA1-201ENST00000341247 SP110Q9HB58 689 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 NMRK1Q9NWW6 199 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 SLC12A8A0AV02 714 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 JUNP05412 331 aaKnown RBP10.47□□□□□ -0.73
LIMA1-201ENST00000341247 ATXN3P54252 364 aaPredicted RBP10.47□□□□□ -0.73
LIMA1-201ENST00000341247 GEMP55040 296 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 MLLT6P55198 1093 aaPredicted RBP10.47□□□□□ -0.73
LIMA1-201ENST00000341247 TAS2R39P59534 338 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 DLG1Q12959 904 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 ABI1Q8IZP0 508 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 MICAL1Q8TDZ2 1067 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 MYEOVQ96EZ4 313 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 GLT1D1Q96MS3 346 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 SERPINB11Q96P15 392 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 RPRD1AQ96P16 312 aaPredicted RBP10.47□□□□□ -0.73
LIMA1-201ENST00000341247 GPR22Q99680 433 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 CDH19Q9H159 772 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 PCDHB8Q9UN66 801 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 TCAF1Q9Y4C2 921 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 PCDHB12Q9Y5F1 795 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 KCNU1A8MYU2 1149 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 ZNF195O14628 629 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 SBK3P0C264 359 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 MSX2P35548 267 aaPredicted RBP10.47□□□□□ -0.73
LIMA1-201ENST00000341247 COPAP53621 1224 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 SLC12A2P55011 1212 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 TAF10Q12962 218 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 MS4A13Q5J8X5 152 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 PPM1LQ5SGD2 360 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 STXBP5Q5T5C0 1151 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 SLC24A5Q71RS6 500 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 CLEC14AQ86T13 490 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 CENPLQ8N0S6 344 aaPredicted RBP10.47□□□□□ -0.73
LIMA1-201ENST00000341247 PYDC1Q8WXC3 89 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 EXT2Q93063 718 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 IL12RB2Q99665 862 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 CRISPLD1Q9H336 500 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 SUDS3Q9H7L9 328 aaPredicted RBP10.47□□□□□ -0.73
LIMA1-201ENST00000341247 FNDC3AQ9Y2H6 1198 aaKnown RBP10.47□□□□□ -0.73
LIMA1-201ENST00000341247 ACOT9Q9Y305 439 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 AIM2O14862 343 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 FGF10O15520 208 aaPredicted RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 MT-CO1P00395 513 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 HNRNPLP14866 589 aaKnown RBP eCLIP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 STMN1P16949 149 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 TSPAN8P19075 237 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 CSE1LP55060 971 aaKnown RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 IHHQ14623 411 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 TRIM71Q2Q1W2 868 aaKnown RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 TRAF7Q6Q0C0 670 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 FRMD7Q6ZUT3 714 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 TMC7Q7Z402 723 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 RNF180Q86T96 592 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 DEFB107AQ8IZN7 70 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 ENDOVQ8N8Q3 282 aaKnown RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 PCSK9Q8NBP7 692 aaKnown RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 DNAJC9Q8WXX5 260 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 STOML1Q9UBI4 398 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 ZDHHC2Q9UIJ5 367 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 PLA2G4CQ9UP65 541 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 COL4A4P53420 1690 aaPredicted RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 VWA8A3KMH1 1905 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 NVLO15381 856 aaKnown RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 TYMPP19971 482 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 ACVRL1P37023 503 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 MAGEA12P43365 314 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 HARS2P49590 506 aaKnown RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 C6orf163Q5TEZ5 329 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 MANEALQ5VSG8 457 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 LRRC8EQ6NSJ5 796 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 NEPROQ6NW34 567 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 MON1AQ86VX9 555 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 COLGALT2Q8IYK4 626 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 DCP1BQ8IZD4 617 aaKnown RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 SREK1Q8WXA9 508 aaKnown RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 SCG3Q8WXD2 468 aaKnown RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 CATSPER2Q96P56 530 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 TSGA13Q96PP4 275 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 MYCBPQ99417 103 aaPredicted RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 ILKAPQ9H0C8 392 aaPredicted RBP10.46□□□□□ -0.73
LIMA1-201ENST00000341247 CCSER2Q9H7U1 834 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 OXSMQ9NWU1 459 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 FBXO5Q9UKT4 447 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 CRYL1Q9Y2S2 319 aa10.46□□□□□ -0.73
LIMA1-201ENST00000341247 CHD9Q3L8U1 2897 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms