RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 HMX2A2RU54 273 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 CXCL11O14625 94 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 ANGPT2O15123 496 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 INPP4BO15327 924 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 AHCYL1O43865 530 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 GMNNO75496 209 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 HOXA11P31270 313 aaPredicted RBP12.08□□□□□ -0.48
USP1-201ENST00000339950 GRTP1Q5TC63 336 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 RBM44Q6ZP01 1051 aaKnown RBP12.08□□□□□ -0.48
USP1-201ENST00000339950 TTC39CQ8N584 583 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 NCLNQ969V3 563 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 C7orf26Q96N11 449 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 CDH19Q9H159 772 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 SPON1Q9HCB6 807 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 PDP2Q9P2J9 529 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 LNPEPQ9UIQ6 1025 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 ANGPTL3Q9Y5C1 460 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 E7ESA3 106 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 TADA2AO75478 443 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 FMO4P31512 558 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 CD151P48509 253 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 GPR15P49685 360 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 SH3BGRP55822 239 aaPredicted RBP12.08□□□□□ -0.48
USP1-201ENST00000339950 NRG1Q02297 640 aaPredicted RBP12.08□□□□□ -0.48
USP1-201ENST00000339950 DSC2Q02487 901 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 ZRANB3Q5FWF4 1079 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 MBLAC2Q68D91 279 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 KIAA1841Q6NSI8 718 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 LRRC8BQ6P9F7 803 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 C16orf59Q7L2K0 433 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 THEM5Q8N1Q8 247 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 PPP2R3CQ969Q6 453 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 SNX27Q96L92 541 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 SIKE1Q9BRV8 207 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 FRMD8Q9BZ67 464 aaPredicted RBP12.08□□□□□ -0.48
USP1-201ENST00000339950 ADNPQ9H2P0 1102 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 FAM159BA6NKW6 160 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 SOCS7O14512 581 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 ABLIM1O14639 778 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 AXIN1O15169 862 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 HDAC3O15379 428 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 PAGE1O75459 146 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 GCATO75600 419 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 RHOBTB1O94844 696 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 AHSGP02765 367 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 LINC00032P0C843 101 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 ITGAXP20702 1163 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 ACTR3P61158 418 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 DPYSL2Q16555 572 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 TEX44Q53QW1 395 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 NET1Q7Z628 596 aaPredicted RBP12.08□□□□□ -0.48
USP1-201ENST00000339950 C2orf69Q8N8R5 385 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 VPS50Q96JG6 964 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 ZNF512Q96ME7 567 aaPredicted RBP12.08□□□□□ -0.48
USP1-201ENST00000339950 EGFL8Q99944 293 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 C16orf70Q9BSU1 422 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 NOL11Q9H8H0 719 aaKnown RBP12.08□□□□□ -0.48
USP1-201ENST00000339950 FZD10Q9ULW2 581 aa12.08□□□□□ -0.48
USP1-201ENST00000339950 ABT1Q9ULW3 272 aaKnown RBP12.08□□□□□ -0.48
USP1-201ENST00000339950 E5RI56 91 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 SNAI1O95863 264 aaPredicted RBP12.07□□□□□ -0.48
USP1-201ENST00000339950 PCSK1P29120 753 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 RPS6KA3P51812 740 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 CTC1Q2NKJ3 1217 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 ZNF789Q5FWF6 425 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 RAB44Q7Z6P3 723 aaPredicted RBP12.07□□□□□ -0.48
USP1-201ENST00000339950 SHCBP1Q8NEM2 672 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 LRRC39Q96DD0 335 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 SMIM14Q96QK8 99 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 TBL1YQ9BQ87 522 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 MTF2Q9Y483 593 aaPredicted RBP12.07□□□□□ -0.48
USP1-201ENST00000339950 CEP290O15078 2479 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 ME2P23368 584 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 NFKBIAP25963 317 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 CDH5P33151 784 aaPredicted RBP12.07□□□□□ -0.48
USP1-201ENST00000339950 SLC7A2P52569 658 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 WNT3AP56704 352 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 ZBTB49Q6ZSB9 765 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 TBATAQ96M53 351 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 GORASP1Q9BQQ3 440 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 CIDEBQ9UHD4 219 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 ACTL7AQ9Y615 435 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 AP4B1Q9Y6B7 739 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 KIAA0100Q14667 2235 aaKnown RBP12.07□□□□□ -0.48
USP1-201ENST00000339950 IGKV6D-21A0A0A0MT36 114 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 C15orf38-AP3S2A0A0A6YYH1 394 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 A0A1W2PQ67 120 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 ARHGEF37A1IGU5 675 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 RRN3P2A6NIE6 340 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 PDLIM1O00151 329 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 CBX4O00257 560 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 MRASO14807 208 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 PRSS56P0CW18 603 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 TIGD5Q53EQ6 642 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 ARPINQ7Z6K5 226 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 DQX1Q8TE96 717 aaKnown RBP12.07□□□□□ -0.48
USP1-201ENST00000339950 HEXDCQ8WVB3 486 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 RBBP8Q99708 897 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 ZMYM5Q9UJ78 669 aa12.07□□□□□ -0.48
USP1-201ENST00000339950 SPANXN3Q5MJ09 141 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms