RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 SLC1A5Q15758 541 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 SEPT7Q16181 437 aaKnown RBP13.57□□□□□ -0.24
HMGB1-202ENST00000339872 ZNF449Q6P9G9 518 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 POTEHQ6S545 545 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 CPLX4Q7Z7G2 160 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 KCNMB4Q86W47 210 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 APOPT1Q96IL0 206 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 CINPQ9BW66 212 aaPredicted RBP13.57□□□□□ -0.24
HMGB1-202ENST00000339872 SLC46A2Q9BY10 475 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 HAUS2Q9NVX0 235 aa13.57□□□□□ -0.24
HMGB1-202ENST00000339872 HMX2A2RU54 273 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 LUC7L3O95232 432 aaKnown RBP13.56□□□□□ -0.24
HMGB1-202ENST00000339872 ASMTLO95671 621 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 VIMP08670 466 aaKnown RBP13.56□□□□□ -0.24
HMGB1-202ENST00000339872 CNTFP26441 200 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 CDH18Q13634 790 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 FRG1Q14331 258 aaKnown RBP13.56□□□□□ -0.24
HMGB1-202ENST00000339872 QPCTQ16769 361 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 HSP90AA5PQ58FG0 334 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 FSCBQ5H9T9 825 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 GPR158Q5T848 1215 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 PKN3Q6P5Z2 889 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 LVRNQ6Q4G3 990 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 CCDC117Q8IWD4 279 aaPredicted RBP13.56□□□□□ -0.24
HMGB1-202ENST00000339872 BBS7Q8IWZ6 715 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 FAM217AQ8IXS0 508 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 SHKBP1Q8TBC3 707 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 TCP10LQ8TDR4 215 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 TCEAL4Q96EI5 215 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 ACE2Q9BYF1 805 aaPredicted RBP13.56□□□□□ -0.24
HMGB1-202ENST00000339872 SEPT3Q9UH03 358 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 TCAF1Q9Y4C2 921 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 RFPL1O75677 317 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 RB1P06400 928 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 DRD4P21917 467 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 SLC18A2Q05940 514 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 HHATQ5VTY9 493 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 SH2D5Q6ZV89 423 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 HTR3DQ70Z44 454 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 LRRC34Q8IZ02 419 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 TADA1Q96BN2 335 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 TGS1Q96RS0 853 aaKnown RBP13.56□□□□□ -0.24
HMGB1-202ENST00000339872 AGAP2Q99490 1192 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 CPNE1Q99829 537 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 MGME1Q9BQP7 344 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 C12orf65Q9H3J6 166 aaKnown RBP13.56□□□□□ -0.24
HMGB1-202ENST00000339872 ARNT2Q9HBZ2 717 aa13.56□□□□□ -0.24
HMGB1-202ENST00000339872 TCP11X1B4DZS4 312 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 GOLGA8TH3BQL2 631 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 LEFTY2O00292 366 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 GFRA2O00451 464 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 TM9SF1O15321 606 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 CLASP2O75122 1294 aaKnown RBP13.55□□□□□ -0.24
HMGB1-202ENST00000339872 F7P08709 466 aaPredicted RBP13.55□□□□□ -0.24
HMGB1-202ENST00000339872 PTPN2P17706 415 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 MZF1P28698 734 aaPredicted RBP13.55□□□□□ -0.24
HMGB1-202ENST00000339872 GP5P40197 560 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 SERPINH1P50454 418 aaKnown RBP13.55□□□□□ -0.24
HMGB1-202ENST00000339872 TEAD2Q15562 447 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 TEDDM1Q5T9Z0 273 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 ZNF783Q6ZMS7 281 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 MFN1Q8IWA4 741 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 TDRD5Q8NAT2 981 aaKnown RBP13.55□□□□□ -0.24
HMGB1-202ENST00000339872 WFDC5Q8TCV5 224 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 DDI1Q8WTU0 396 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 PTCD2Q8WV60 388 aaKnown RBP13.55□□□□□ -0.24
HMGB1-202ENST00000339872 IFT43Q96FT9 208 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 EXOC2Q96KP1 924 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 MAGEB18Q96M61 343 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 PSKH2Q96QS6 385 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 IARS2Q9NSE4 1012 aaKnown RBP13.55□□□□□ -0.24
HMGB1-202ENST00000339872 PCMTD2Q9NV79 361 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 SLC17A7Q9P2U7 560 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 DNMT3BQ9UBC3 853 aaKnown RBP13.55□□□□□ -0.24
HMGB1-202ENST00000339872 VPS28Q9UK41 221 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 GRID1Q9ULK0 1009 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 ZNF510Q9Y2H8 683 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 CHD7Q9P2D1 2997 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 MYO7AQ13402 2215 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 COPEO14579 308 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 PER2O15055 1255 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 SNAP91O60641 907 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 RHOP08100 348 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 SERPINF2P08697 491 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 PFKLP17858 780 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 ADRA1DP25100 572 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 AVPR1AP37288 418 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 EPHA5P54756 1037 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 ARF5P84085 180 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 RFTN1Q14699 578 aaPredicted RBP13.55□□□□□ -0.24
HMGB1-202ENST00000339872 SIRPB2Q5JXA9 342 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 ZNF697Q5TEC3 545 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 PDPK2PQ6A1A2 396 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 ALG1LQ6GMV1 187 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 LINGO4Q6UY18 593 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 TPGS1Q6ZTW0 290 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 STRA8Q7Z7C7 330 aa13.55□□□□□ -0.24
HMGB1-202ENST00000339872 IQCGQ9H095 443 aaKnown RBP13.55□□□□□ -0.24
HMGB1-202ENST00000339872 MRM3Q9HC36 420 aaKnown RBP13.55□□□□□ -0.24
HMGB1-202ENST00000339872 FGF19O95750 216 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms