RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 PTCD3Q96EY7 689 aaKnown RBP12.96□□□□□ -0.33
USP47-202ENST00000339865 PDLIM2Q96JY6 352 aa12.96□□□□□ -0.33
USP47-202ENST00000339865 CEP41Q9BYV8 373 aa12.96□□□□□ -0.33
USP47-202ENST00000339865 FRMD8P1Q9BZ68 369 aaPredicted RBP12.96□□□□□ -0.33
USP47-202ENST00000339865 PRDM8Q9NQV8 689 aa12.96□□□□□ -0.33
USP47-202ENST00000339865 CCRL2O00421 344 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 SDC2P34741 201 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 PFKFB4Q16877 469 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 ILDR2Q71H61 639 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 NET1Q7Z628 596 aaPredicted RBP12.96□□□□□ -0.34
USP47-202ENST00000339865 TEX19Q8NA77 164 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 TREM1Q9NP99 234 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 SPAG4Q9NPE6 437 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 SUCOQ9UBS9 1254 aaKnown RBP12.96□□□□□ -0.34
USP47-202ENST00000339865 PLA2G4CQ9UP65 541 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 CUL7Q14999 1698 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 SNAP23O00161 211 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 DCLK1O15075 740 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 DGAT1O75907 488 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 ADAM8P78325 824 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 MC1RQ01726 317 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 SMIM5Q71RC9 77 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 GLT6D1Q7Z4J2 308 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 GALNT5Q7Z7M9 940 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 UCMAQ8WVF2 138 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 ANGPT4Q9Y264 503 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 A0A1W2PQJ5 194 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 SAGE2PA6NJ88 616 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 CKMP06732 381 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 PSKH1P11801 424 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 NELFEP18615 380 aaKnown RBP12.96□□□□□ -0.34
USP47-202ENST00000339865 HUNKP57058 714 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 PRR23BQ6ZRT6 265 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 PSME2Q9UL46 239 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 MAU2Q9Y6X3 613 aa12.96□□□□□ -0.34
USP47-202ENST00000339865 C5orf51A6NDU8 294 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 A8MX80 341 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 NPTXRO95502 500 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 TCF7P36402 384 aaPredicted RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 RPL5P46777 297 aaKnown RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 MAPKAPK3Q16644 382 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 ZNF549Q6P9A3 640 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 FUKQ8N0W3 1084 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 SRFBP1Q8NEF9 429 aaKnown RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 ZSWIM1Q9BR11 485 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 KLK14Q9P0G3 267 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 WDR27A2RRH5 827 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 CYP2E1P05181 493 aaPredicted RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 ACO1P21399 889 aaKnown RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 PDK2Q15119 407 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 PTPN20Q4JDL3 420 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 EFCAB12Q6NXP0 572 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 TBC1D21Q8IYX1 336 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 IL17REQ8NFR9 667 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 FCRL4Q96PJ5 515 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 OPTCQ9UBM4 332 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 PACSIN3Q9UKS6 424 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 ODC1P11926 461 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 GADD45AP24522 165 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 SSTR1P30872 391 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 CDH4P55283 916 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 TUBA1BP68363 451 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 TUBA1AQ71U36 451 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 MCOLN3Q8TDD5 553 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 MND1Q9BWT6 205 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 ELAC1Q9H777 363 aaKnown RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 SOHLH2Q9NX45 425 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 KIAA0100Q14667 2235 aaKnown RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 TRAPPC8Q9Y2L5 1435 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 GMFGO60234 142 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 IFNA16P05015 189 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 CDK16Q00536 496 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 ZNHIT3Q15649 155 aaPredicted RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 FRRS1Q6ZNA5 592 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 PNPLA3Q9NST1 481 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 LRIG2O94898 1065 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 PSMA1P25786 263 aaKnown RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 ACOX1Q15067 660 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 CWF19L1Q69YN2 538 aaKnown RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 KCNV1Q6PIU1 500 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 TRIM74Q86UV6 250 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 TRIM73Q86UV7 250 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 PHC2Q8IXK0 858 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 FAM98AQ8NCA5 519 aaKnown RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 RNF31Q96EP0 1072 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 SEMA4AQ9H3S1 761 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 COL17A1Q9UMD9 1497 aaPredicted RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 DUOX2Q9NRD8 1548 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 AP5Z1O43299 807 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 SSX5O60225 188 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 B3GAT3O94766 335 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 CYP2C9P11712 490 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 TPH1P17752 444 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 PRKAA2P54646 552 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 TXNL4AP83876 142 aaKnown RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 EFCAB3Q8N7B9 438 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 SMG7Q92540 1137 aaKnown RBP12.95□□□□□ -0.34
USP47-202ENST00000339865 EGFL7Q9UHF1 273 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 EDARQ9UNE0 448 aa12.95□□□□□ -0.34
USP47-202ENST00000339865 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms