RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.24■□□□□ 0.19
NPHP3-201ENST00000337331 RGS5O15539 181 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 PPP1R11O60927 126 aaPredicted RBP16.24■□□□□ 0.19
NPHP3-201ENST00000337331 EPHA3P29320 983 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 CCR1P32246 355 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 TAS2R40P59535 323 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 NOMO3P69849 1222 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 CHRNB3Q05901 458 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 ZNF177Q13360 481 aaPredicted RBP16.24■□□□□ 0.19
NPHP3-201ENST00000337331 MOGQ16653 247 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 ADCK2Q7Z695 626 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 SFRP1Q8N474 314 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 RIN3Q8TB24 985 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 DENND1AQ8TEH3 1009 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 SEMA4DQ92854 862 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 PKP2Q99959 881 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 WDR12Q9GZL7 423 aaKnown RBP16.24■□□□□ 0.19
NPHP3-201ENST00000337331 A0A0B4J269 797 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 C5orf58C9J3I9 102 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 SORBS2O94875 1100 aaKnown RBP16.24■□□□□ 0.19
NPHP3-201ENST00000337331 PARNO95453 639 aaKnown RBP16.24■□□□□ 0.19
NPHP3-201ENST00000337331 PABPC1P11940 636 aaKnown RBP16.24■□□□□ 0.19
NPHP3-201ENST00000337331 UBA1P22314 1058 aaKnown RBP16.24■□□□□ 0.19
NPHP3-201ENST00000337331 LHX1P48742 406 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 OAZ1P54368 228 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 KCTD8Q6ZWB6 473 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 LRRC39Q96DD0 335 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 APBA2Q99767 749 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 WDR55Q9H6Y2 383 aaPredicted RBP16.24■□□□□ 0.19
NPHP3-201ENST00000337331 CCDC167Q9P0B6 97 aa16.24■□□□□ 0.19
NPHP3-201ENST00000337331 A0A088AWK7 358 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 MAGEB16A2A368 324 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 BTBD19C9JJ37 291 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 AVILO75366 819 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 WDR47O94967 919 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 NR2C2P49116 596 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 SLC11A2P49281 568 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 PLK1P53350 603 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 CRADDP78560 199 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 WDR45BQ5MNZ6 344 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 FKBP1CQ5VVH2 108 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 CCSAPQ6IQ19 270 aaPredicted RBP16.23■□□□□ 0.19
NPHP3-201ENST00000337331 HERC6Q8IVU3 1022 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 SLC4A11Q8NBS3 891 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 VPS37AQ8NEZ2 397 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 GLT1D1Q96MS3 346 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 SCN3BQ9NY72 215 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 INPP4BO15327 924 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 TSPAN3O60637 253 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 SERPINB7O75635 380 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 ALDH1A1P00352 501 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 GRIK4Q16099 956 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 MARC1Q5VT66 337 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 ZNF470Q6ECI4 717 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 CRTC3Q6UUV7 619 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 ANKS1BQ7Z6G8 1248 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 C12orf50Q8NA57 414 aaPredicted RBP16.23■□□□□ 0.19
NPHP3-201ENST00000337331 MAGED4Q96JG8 741 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 ZNF556Q9HAH1 456 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 PRPF19Q9UMS4 504 aaKnown RBP16.23■□□□□ 0.19
NPHP3-201ENST00000337331 SYNPO2Q9UMS6 1093 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 PMF1-BGLAPU3KQ54 211 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 FAM149AA5PLN7 773 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 TRDMT1O14717 391 aaKnown RBP16.23■□□□□ 0.19
NPHP3-201ENST00000337331 TYROBPO43914 113 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 BPGMP07738 259 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 MYCLP1P12525 358 aaPredicted RBP16.23■□□□□ 0.19
NPHP3-201ENST00000337331 MYL4P12829 197 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 IL12RB1P42701 662 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 PPP3CCP48454 512 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 JAM2P57087 298 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 GK3PQ14409 553 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 SHROOM1Q2M3G4 852 aaPredicted RBP16.23■□□□□ 0.19
NPHP3-201ENST00000337331 SLC27A1Q6PCB7 646 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 Q6ZNX1 250 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 TFAP2DQ7Z6R9 452 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 CLIP4Q8N3C7 705 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 TCAIMQ8N3R3 496 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 DNAJB3Q8WWF6 145 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 PIF1Q9H611 641 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 PNMA8BQ9ULN7 279 aaPredicted RBP16.23■□□□□ 0.19
NPHP3-201ENST00000337331 PCDHGA3Q9Y5H0 932 aa16.23■□□□□ 0.19
NPHP3-201ENST00000337331 F5H5T6 163 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 PGAM1P18669 254 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 XRCC1P18887 633 aaPredicted RBP16.22■□□□□ 0.19
NPHP3-201ENST00000337331 PIK3R1P27986 724 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 SPDYE7PQ495Y7 208 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 PLEKHH3Q7Z736 793 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 ZDHHC17Q8IUH5 632 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 ANKLE1Q8NAG6 615 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 ACTRT2Q8TDY3 377 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 ARPC5LQ9BPX5 153 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 SLC12A8A0AV02 714 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 CDH18Q13634 790 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 CCNIQ14094 377 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 TTLL9Q3SXZ7 439 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 BBS12Q6ZW61 710 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 ADGRG6Q86SQ4 1221 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 DMRTB1Q96MA1 342 aa16.22■□□□□ 0.19
NPHP3-201ENST00000337331 KREMEN1Q96MU8 473 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms