RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 ATP1A4Q13733 1029 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 CERCAMQ5T4B2 595 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 RFWD3Q6PCD5 774 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 OTOP3Q7RTS5 596 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 ERVK-5Q9HDB9 667 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 TRMT13Q9NUP7 481 aaKnown RBP10.28□□□□□ -0.76
CHD3-201ENST00000330494 SOHLH2Q9NX45 425 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 RGPD2P0DJD1 1756 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 MRASO14807 208 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 ST13P50502 369 aaKnown RBP10.28□□□□□ -0.76
CHD3-201ENST00000330494 TGM3Q08188 693 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 TNFRSF25Q93038 417 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 HDAC10Q969S8 669 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 PANX3Q96QZ0 392 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 FTHL17Q9BXU8 183 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 GIT1Q9Y2X7 761 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 PCDHB9Q9Y5E1 797 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 GPR25O00155 361 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 HS6ST1O60243 411 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 ATP6V1G2O95670 118 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 ENO2P09104 434 aaPredicted RBP10.28□□□□□ -0.76
CHD3-201ENST00000330494 NOL9Q5SY16 702 aaKnown RBP10.28□□□□□ -0.76
CHD3-201ENST00000330494 TYW3Q6IPR3 259 aaKnown RBP10.28□□□□□ -0.76
CHD3-201ENST00000330494 CRTC3Q6UUV7 619 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 ANKRD49Q8WVL7 239 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 PYDC1Q8WXC3 89 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 USP7Q93009 1102 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 CHKBQ9Y259 395 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 FOXO6A8MYZ6 492 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 ACADSP16219 412 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 SMPD1P17405 629 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 NOS3P29474 1203 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 RPL9P32969 192 aaKnown RBP10.28□□□□□ -0.76
CHD3-201ENST00000330494 TAF10Q12962 218 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 UBAP2LQ14157 1087 aaKnown RBP10.28□□□□□ -0.76
CHD3-201ENST00000330494 DUSP28Q4G0W2 176 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 TMEM26Q6ZUK4 368 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 SELENOMQ8WWX9 145 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 HSFY1Q96LI6 401 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 BTBD10Q9BSF8 475 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 ATP13A3Q9H7F0 1226 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 KLHL20Q9Y2M5 609 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 NCANO14594 1321 aa10.28□□□□□ -0.76
CHD3-201ENST00000330494 SOWAHBA6NEL2 793 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 LRRC10BA6NIK2 292 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 RGS14O43566 566 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 ZNF862O60290 1169 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 MATKP42679 507 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 KCTD21Q4G0X4 260 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 STXBP5Q5T5C0 1151 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 SCARA3Q6AZY7 606 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 GPR141Q7Z602 305 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 PHF13Q86YI8 300 aaPredicted RBP10.27□□□□□ -0.76
CHD3-201ENST00000330494 OSBPL10Q9BXB5 764 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 KRCC1Q9NPI7 259 aaPredicted RBP10.27□□□□□ -0.76
CHD3-201ENST00000330494 LRATO95237 230 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 COX7A2P14406 83 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 EPORP19235 508 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 LRPAP1P30533 357 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 GRIA4P48058 902 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 PTPRNQ16849 979 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.27□□□□□ -0.76
CHD3-201ENST00000330494 CAMKK1Q8N5S9 505 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 FBXO30Q8TB52 745 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 MPP4Q96JB8 637 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 INVSQ9Y283 1065 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 AKAP12Q02952 1782 aa10.27□□□□□ -0.76
CHD3-201ENST00000330494 ANKDD1BA6NHY2 528 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 CSH1P0DML2 217 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 CSH2P0DML3 217 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 TFEBP19484 476 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 KPNB1Q14974 876 aaKnown RBP10.27□□□□□ -0.77
CHD3-201ENST00000330494 CCL14Q16627 93 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 NRF1Q16656 503 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 PTPN20Q4JDL3 420 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 LUZP2Q86TE4 346 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 PTGR2Q8N8N7 351 aaPredicted RBP10.27□□□□□ -0.77
CHD3-201ENST00000330494 NKX2-3Q8TAU0 364 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 NSMCE2Q96MF7 247 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 PDZD7Q9H5P4 517 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 AHSPQ9NZD4 102 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 ATP6AP2A0A1C7CYW4 349 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 ATP6AP2O75787 350 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 LINC00032P0C843 101 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 HNRNPLP14866 589 aaKnown RBP eCLIP10.27□□□□□ -0.77
CHD3-201ENST00000330494 CDC25CP30307 473 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 SEMA5AQ13591 1074 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 GPR158Q5T848 1215 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 TRIM69Q86WT6 500 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 OR10G6Q8NH81 332 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 CLEC4DQ8WXI8 215 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 ACAT2Q9BWD1 397 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 PPIEQ9UNP9 301 aaKnown RBP10.27□□□□□ -0.77
CHD3-201ENST00000330494 SLC9A8Q9Y2E8 581 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 GLTPD2A6NH11 291 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 PEX1O43933 1283 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 ITGAVP06756 1048 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 AMD1P17707 334 aa10.27□□□□□ -0.77
CHD3-201ENST00000330494 RPL17P18621 184 aaKnown RBP10.27□□□□□ -0.77
CHD3-201ENST00000330494 CRATP43155 626 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms