RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 NT5DC3Q86UY8 548 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 AASSQ9UDR5 926 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 MAN2B2Q9Y2E5 1009 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 ADGRB3O60242 1522 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 SIN3BO75182 1162 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 GATBO75879 557 aaKnown RBP14.42□□□□□ -0.1
COL7A1-201ENST00000328333 NADKO95544 446 aaPredicted RBP14.42□□□□□ -0.1
COL7A1-201ENST00000328333 GSTT2BP0CG30 244 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 ITGA4P13612 1032 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 MMP13P45452 471 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 ITCHQ96J02 903 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 LYVE1Q9Y5Y7 322 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 OR56A5P0C7T3 313 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 FGFR3P22607 806 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 TTPAP49638 278 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 PSME3P61289 254 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 NFE2Q16621 373 aaPredicted RBP14.42□□□□□ -0.1
COL7A1-201ENST00000328333 SYCE2Q6PIF2 218 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 CREG2Q8IUH2 290 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 ZNF224Q9NZL3 707 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 PRODHO43272 600 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 HNF4AP41235 474 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 RGS1Q08116 209 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 ACSM2AQ08AH3 577 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 IL18Q14116 193 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 ACSM2BQ68CK6 577 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 MFSD5Q6N075 450 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 MILR1Q7Z6M3 343 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 AKAP1Q92667 903 aaKnown RBP eCLIP14.42□□□□□ -0.1
COL7A1-201ENST00000328333 DNPEPQ9ULA0 475 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 CCR1P32246 355 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 CYP2C18P33260 490 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 AKIRIN2Q53H80 203 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 ZNF621Q6ZSS3 439 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 TRIM74Q86UV6 250 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 TRIM73Q86UV7 250 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 ABRAQ8N0Z2 381 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 APOL2Q9BQE5 337 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 SUV39H1O43463 412 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 DGKAP23743 735 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 FBXL16Q8N461 479 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 TBL1YQ9BQ87 522 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 PAK6Q9NQU5 681 aaPredicted RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 GPN3Q9UHW5 284 aaPredicted RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 PNPLA6Q8IY17 1366 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 ITFG2Q969R8 447 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 SAE1Q9UBE0 346 aaPredicted RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 SAMHD1Q9Y3Z3 626 aaKnown RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 HDAC3O15379 428 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 HOXA2O43364 376 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 NOL4O94818 638 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 NFKB1P19838 968 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 RPL9P32969 192 aaKnown RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 RPL21P46778 160 aaKnown RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 CYP2A13Q16696 494 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 MARC1Q5VT66 337 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 FAM131AQ6UXB0 335 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 SEPT5Q99719 369 aaPredicted RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 SLC6A15Q9H2J7 730 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 DHX33Q9H6R0 707 aaKnown RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 GH1P01241 217 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 AMPD2Q01433 879 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 ADAMTSL2Q86TH1 951 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 ORAI2Q96SN7 254 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 PCDHA11Q9Y5I1 949 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 RLN1P04808 185 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 IFNA16P05015 189 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 PRDX6P30041 224 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 RPL26P61254 145 aaKnown RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 HERC3Q15034 1050 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 FAM189A2Q15884 450 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 GATAD2AQ86YP4 633 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 TAS2R7Q9NYW3 318 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 SEC14L4Q9UDX3 406 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 CFL2Q9Y281 166 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 PCDHGB3Q9Y5G1 929 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 SLC22A1O15245 554 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 APBA3O96018 575 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 LSM12Q3MHD2 195 aaKnown RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 SLITRK4Q8IW52 837 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 GALNT15Q8N3T1 639 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 TLR10Q9BXR5 811 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 FAM126AQ9BYI3 521 aaPredicted RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 SMPD3Q9NY59 655 aaPredicted RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 A0A087WZ62 844 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 COX7A2P14406 83 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 ACVR2BQ13705 512 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 BLMHQ13867 455 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 CAMK1Q14012 370 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 MEA1Q16626 185 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 CYP20A1Q6UW02 462 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 DAW1Q8N136 415 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 SVOPLQ8N434 492 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 ETNPPLQ8TBG4 499 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 YME1L1Q96TA2 773 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 FAIM2Q9BWQ8 316 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 XKR8Q9H6D3 395 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 RAVER2Q9HCJ3 691 aaKnown RBP14.41□□□□□ -0.1
COL7A1-201ENST00000328333 ABCG2Q9UNQ0 655 aa14.41□□□□□ -0.1
COL7A1-201ENST00000328333 MAGEB3O15480 346 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms