RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 ACTRT1Q8TDG2 376 aa18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 HTR3CQ8WXA8 447 aa18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 ZNF641Q96N77 438 aaPredicted RBP18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 PPP1R2P1Q96PQ5 205 aa18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 FAM129BQ96TA1 746 aa18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 IL12RB2Q99665 862 aa18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 ATP13A3Q9H7F0 1226 aa18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 RBM22Q9NW64 420 aaKnown RBP eCLIP18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 C2orf42Q9NWW7 574 aa18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 SAE1Q9UBE0 346 aaPredicted RBP18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 LHX3Q9UBR4 397 aa18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 TRHDEQ9UKU6 1024 aa18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 FZD4Q9ULV1 537 aa18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 NCKAP1Q9Y2A7 1128 aa18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 HCN4Q9Y3Q4 1203 aa18.16■□□□□ 0.5
SSSCA1-201ENST00000309328 GOLGA6L10A0A0M3HER8 536 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 BCLAF3A2AJT9 711 aaKnown RBP18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 SLC7A4O43246 635 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 BNIP3LO60238 219 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 IL1BP01584 269 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 IGLV3-19P01714 112 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 SP9P0CG40 484 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 RBP3P10745 1247 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 VAV1P15498 845 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 CA4P22748 312 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 SUOXP51687 545 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 PTPN5P54829 565 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 LONRF2Q1L5Z9 754 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 TEX44Q53QW1 395 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 DRICH1Q6PGQ1 229 aaPredicted RBP18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 KIAA1324Q6UXG2 1013 aaKnown RBP18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 LEKR1Q6ZMV7 388 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 MMAAQ8IVH4 418 aaKnown RBP18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 NETO2Q8NC67 525 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 TSEN2Q8NCE0 465 aaKnown RBP18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 NUDCD1Q96RS6 583 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 WDR24Q96S15 920 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 PABPC3Q9H361 631 aaKnown RBP18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 USP36Q9P275 1121 aaKnown RBP18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 TPX2Q9ULW0 747 aaKnown RBP18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 SAR1BQ9Y6B6 198 aa18.15■□□□□ 0.5
SSSCA1-201ENST00000309328 KRIT1O00522 736 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 SOCS5O75159 536 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 NFKBIAP25963 317 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 ITGB7P26010 798 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 SERPINA4P29622 427 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 STIP1P31948 543 aaKnown RBP18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 CXCR5P32302 372 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 SLC8A1P32418 973 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 SLC14A2Q15849 920 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 CCNG2Q16589 344 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 DARS2Q6PI48 645 aaKnown RBP18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 SLC36A4Q6YBV0 504 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 NYAP1Q6ZVC0 841 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 SRLQ86TD4 932 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 ZBTB44Q8NCP5 570 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 SLC35B2Q8TB61 432 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 PIP4K2CQ8TBX8 421 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 SPOCK2Q92563 424 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 NKD2Q969F2 451 aaPredicted RBP18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 HERPUD2Q9BSE4 406 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 ZDHHC6Q9H6R6 413 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 ITM2CQ9NQX7 267 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 DKK3Q9UBP4 350 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 ACTL7AQ9Y615 435 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 WASF2Q9Y6W5 498 aa18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 MYO18AQ92614 2054 aaKnown RBP18.14■□□□□ 0.49
SSSCA1-201ENST00000309328 CKAP5Q14008 2032 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 KCNK1O00180 336 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 LEFTY1O75610 366 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 JCHAINP01591 159 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 CR2P20023 1033 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 CASQ1P31415 396 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 PSMD8P48556 350 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 SCNN1BP51168 640 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 SPDYCQ5MJ68 293 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 CFAP58Q5T655 872 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 ATXN7L2Q5T6C5 722 aaPredicted RBP18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 ITPRIPL1Q6GPH6 555 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 BRAT1Q6PJG6 821 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 GDPD4Q6W3E5 623 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 RAB7BQ96AH8 199 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 OMDQ99983 421 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 HDAC8Q9BY41 377 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 PCED1AQ9H1Q7 454 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 KDM4CQ9H3R0 1056 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 MTG2Q9H4K7 406 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 SGK2Q9HBY8 427 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 NT5MQ9NPB1 228 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 SCUBE2Q9NQ36 999 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 SEPT10Q9P0V9 454 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 ATP8A1Q9Y2Q0 1164 aa18.13■□□□□ 0.49
SSSCA1-201ENST00000309328 ZNF318Q5VUA4 2279 aa18.12■□□□□ 0.49
SSSCA1-201ENST00000309328 KMT2EQ8IZD2 1858 aa18.12■□□□□ 0.49
SSSCA1-201ENST00000309328 KPNA3O00505 521 aaPredicted RBP18.12■□□□□ 0.49
SSSCA1-201ENST00000309328 INSIG1O15503 277 aa18.12■□□□□ 0.49
SSSCA1-201ENST00000309328 OPHN1O60890 802 aa18.12■□□□□ 0.49
SSSCA1-201ENST00000309328 ITGAVP06756 1048 aa18.12■□□□□ 0.49
SSSCA1-201ENST00000309328 SERPINF2P08697 491 aa18.12■□□□□ 0.49
SSSCA1-201ENST00000309328 PTPN3P26045 913 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms