RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ROPN1LQ96C74 230 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 CINPQ9BW66 212 aaPredicted RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 CLK4Q9HAZ1 481 aaKnown RBP6.49□□□□□ -1.37
VPS35-201ENST00000299138 GIT1Q9Y2X7 761 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 FADS3Q9Y5Q0 445 aa6.49□□□□□ -1.37
VPS35-201ENST00000299138 LAMB2P55268 1798 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 A0A0X1KG70 313 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 FAM196BA6NMK8 535 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 PTGES3LE9PB15 166 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 SLC16A4O15374 487 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 KHDRBS3O75525 346 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 SNX4O95219 450 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 YWHAQP27348 245 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 CYP2C18P33260 490 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ELK3P41970 407 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ZNF143P52747 638 aaPredicted RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 RAB2AP61019 212 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 TXNL4AP83876 142 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 CREB5Q02930 508 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 C1DQ13901 141 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 SPRED3Q2MJR0 410 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 DHRS4L2Q6PKH6 230 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 AFTPHQ6ULP2 937 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 SPATA18Q8TC71 538 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 DUS3LQ96G46 650 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 CBWD1Q9BRT8 395 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 KCNH7Q9NS40 1196 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 NPHP3-ACAD11A0A0J9YXS1 232 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 MEI4A8MW99 385 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 TFECO14948 347 aaPredicted RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 IL12AP29459 219 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ECM1Q16610 540 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 DCAF4L1Q3SXM0 396 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ZC2HC1CQ53FD0 456 aaPredicted RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 MROH9Q5TGP6 573 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 LIN54Q6MZP7 749 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ZNF544Q6NX49 715 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 GJB7Q6PEY0 223 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 EIF3MQ7L2H7 374 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 CIR1Q86X95 450 aaPredicted RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 SLC22A9Q8IVM8 553 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 BHMTQ93088 406 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 AKT1S1Q96B36 256 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 RMDN3Q96TC7 470 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 WDR12Q9GZL7 423 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 NMUR2Q9GZQ4 415 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 PCIF1Q9H4Z3 704 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 PIF1Q9H611 641 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 LRRC4Q9HBW1 653 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 TAS2R14Q9NYV8 317 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 UBA2Q9UBT2 640 aaPredicted RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 DNPEPQ9ULA0 475 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 SLC30A1Q9Y6M5 507 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 LOC100506127A0A0U1RQW1 187 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 TCRBV9S1A1TA0A576 114 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 SH3PXD2BA1X283 911 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 GCATO75600 419 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 RBP1P09455 135 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 TFE3P19532 575 aaPredicted RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 MAGEA12P43365 314 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 PSMD4P55036 377 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 ZNF45Q02386 682 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 CTC1Q2NKJ3 1217 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ZNF829Q3KNS6 432 aaPredicted RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 HECTD3Q5T447 861 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 AADACL4Q5VUY2 407 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 COMMD2Q86X83 199 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 CAMKK1Q8N5S9 505 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ZFP28Q8NHY6 868 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 RMDN1Q96DB5 314 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 TRMT13Q9NUP7 481 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 NCKIPSDQ9NZQ3 722 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 GNPTGQ9UJJ9 305 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 HIF3AQ9Y2N7 669 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 MRPS7Q9Y2R9 242 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 UBE2QL1A1L167 161 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 RPP38P78345 283 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 ACAP2Q15057 778 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 BATFQ16520 125 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ZFP69Q49AA0 526 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 RBM20Q5T481 1227 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 SEL1L3Q68CR1 1132 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 NAPEPLDQ6IQ20 393 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 CDC42EP5Q6NZY7 148 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 PEG10Q86TG7 708 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 UNC93AQ86WB7 457 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 CBWD2Q8IUF1 395 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 GLIS3Q8NEA6 775 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 TSPAN14Q8NG11 270 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 ELMO2Q96JJ3 720 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 FAM84AQ96KN4 292 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 MAGEB5Q9BZ81 275 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 OSBPL6Q9BZF3 934 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 SDCBP2Q9H190 292 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 CMTM6Q9NX76 183 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 PHLPP1O60346 1717 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 FAM159BA6NKW6 160 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 NARSO43776 548 aaKnown RBP6.48□□□□□ -1.37
VPS35-201ENST00000299138 PLIN3O60664 434 aa6.48□□□□□ -1.37
VPS35-201ENST00000299138 APOC1P02654 83 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms