RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 ZNF185O15231 689 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 MID1O15344 667 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 PSTPIP1O43586 416 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 SYF2O95926 243 aaKnown RBP17.04■□□□□ 0.32
SDCBP-201ENST00000260130 ADH1BP00325 375 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 TCP1P17987 556 aaKnown RBP17.04■□□□□ 0.32
SDCBP-201ENST00000260130 C5AR1P21730 350 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 PSMD8P48556 350 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 RPL6Q02878 288 aaKnown RBP17.04■□□□□ 0.32
SDCBP-201ENST00000260130 ODF2Q5BJF6 829 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 FAM46CQ5VWP2 391 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 DPY19L3Q6ZPD9 716 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 VSIG1Q86XK7 387 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 LOXL4Q96JB6 756 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 PDFQ9HBH1 243 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 FBXL12Q9NXK8 326 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 UBA2Q9UBT2 640 aaPredicted RBP17.04■□□□□ 0.32
SDCBP-201ENST00000260130 SARDHQ9UL12 918 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 ZNF487B1APH4 448 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 PDE2AO00408 941 aaPredicted RBP17.04■□□□□ 0.32
SDCBP-201ENST00000260130 NDUFS2O75306 463 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 TMCC1O94876 653 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 KRT1P04264 644 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 CHRNA3P32297 505 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 IFI16Q16666 785 aaKnown RBP17.04■□□□□ 0.32
SDCBP-201ENST00000260130 SPDYCQ5MJ68 293 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 ARHGAP36Q6ZRI8 547 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 USP30Q70CQ3 517 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 FAM124AQ86V42 546 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 TMEFF1Q8IYR6 380 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 CHST14Q8NCH0 376 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 GANCQ8TET4 914 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 RNF157Q96PX1 679 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 TM6SF2Q9BZW4 377 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 IPO11Q9UI26 975 aaKnown RBP17.04■□□□□ 0.32
SDCBP-201ENST00000260130 GMEB2Q9UKD1 530 aa17.04■□□□□ 0.32
SDCBP-201ENST00000260130 C3orf70A6NLC5 250 aaPredicted RBP17.03■□□□□ 0.32
SDCBP-201ENST00000260130 C1QTNF3-AMACRE9PGA6 284 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 RETP07949 1114 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 IL10RBQ08334 325 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 C2orf54Q08AI8 447 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 PAFAH1B3Q15102 231 aaKnown RBP17.03■□□□□ 0.32
SDCBP-201ENST00000260130 NCBP2-AS2Q69YL0 99 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 CREG2Q8IUH2 290 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 PQLC3Q8N755 202 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 TMIEQ8NEW7 156 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 PIP4K2CQ8TBX8 421 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 RNF25Q96BH1 459 aaPredicted RBP17.03■□□□□ 0.32
SDCBP-201ENST00000260130 OMDQ99983 421 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 SP110Q9HB58 689 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 NCDNQ9UBB6 729 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 IL36AQ9UHA7 158 aa17.03■□□□□ 0.32
SDCBP-201ENST00000260130 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.03■□□□□ 0.32
SDCBP-201ENST00000260130 A0A1W2PP55 124 aa17.02■□□□□ 0.32
SDCBP-201ENST00000260130 PRNPP04156 253 aa17.02■□□□□ 0.32
SDCBP-201ENST00000260130 CTSLP07711 333 aa17.02■□□□□ 0.32
SDCBP-201ENST00000260130 SNRPD1P62314 119 aaKnown RBP17.02■□□□□ 0.32
SDCBP-201ENST00000260130 CYTH1Q15438 398 aa17.02■□□□□ 0.32
SDCBP-201ENST00000260130 ALYREFQ86V81 257 aaKnown RBP17.02■□□□□ 0.32
SDCBP-201ENST00000260130 HDDC3Q8N4P3 179 aa17.02■□□□□ 0.32
SDCBP-201ENST00000260130 OR2AP1Q8NGE2 309 aa17.02■□□□□ 0.32
SDCBP-201ENST00000260130 HEPHQ9BQS7 1158 aa17.02■□□□□ 0.32
SDCBP-201ENST00000260130 BTBD1Q9H0C5 482 aa17.02■□□□□ 0.32
SDCBP-201ENST00000260130 GPR179Q6PRD1 2367 aa17.02■□□□□ 0.32
SDCBP-201ENST00000260130 RNASEH2AO75792 299 aaKnown RBP17.02■□□□□ 0.31
SDCBP-201ENST00000260130 GSRP00390 522 aa17.02■□□□□ 0.31
SDCBP-201ENST00000260130 ACSL1P33121 698 aa17.02■□□□□ 0.31
SDCBP-201ENST00000260130 DHPSP49366 369 aaPredicted RBP17.02■□□□□ 0.31
SDCBP-201ENST00000260130 CCNHP51946 323 aaPredicted RBP17.02■□□□□ 0.31
SDCBP-201ENST00000260130 ARSIQ5FYB1 569 aa17.02■□□□□ 0.31
SDCBP-201ENST00000260130 RYBPQ8N488 228 aaPredicted RBP17.02■□□□□ 0.31
SDCBP-201ENST00000260130 AADATQ8N5Z0 425 aa17.02■□□□□ 0.31
SDCBP-201ENST00000260130 DEFB119Q8N690 84 aa17.02■□□□□ 0.31
SDCBP-201ENST00000260130 GPR174Q9BXC1 333 aa17.02■□□□□ 0.31
SDCBP-201ENST00000260130 MAK16Q9BXY0 300 aaKnown RBP17.02■□□□□ 0.31
SDCBP-201ENST00000260130 NEUROG2Q9H2A3 272 aa17.02■□□□□ 0.31
SDCBP-201ENST00000260130 SGK2Q9HBY8 427 aa17.02■□□□□ 0.31
SDCBP-201ENST00000260130 SERGEFQ9UGK8 458 aa17.02■□□□□ 0.31
SDCBP-201ENST00000260130 CAPN6Q9Y6Q1 641 aa17.02■□□□□ 0.31
SDCBP-201ENST00000260130 GRID2IPA4D2P6 1211 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 MFSD11O43934 449 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 PALMO75781 387 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 PTGER3P43115 390 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 METAP1P53582 386 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 RHOAP61586 193 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 RFTN1Q14699 578 aaPredicted RBP17.01■□□□□ 0.31
SDCBP-201ENST00000260130 LRRC49Q8IUZ0 686 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 KATNAL2Q8IYT4 538 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 LRRC57Q8N9N7 239 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 ZNF419Q96HQ0 510 aaPredicted RBP17.01■□□□□ 0.31
SDCBP-201ENST00000260130 HINFPQ9BQA5 517 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 FZD4Q9ULV1 537 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 WASF2Q9Y6W5 498 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 MAFKO60675 156 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 LEFTY1O75610 366 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 EPN2O95208 641 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 DRD3P35462 400 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 MYLK3Q32MK0 819 aa17.01■□□□□ 0.31
SDCBP-201ENST00000260130 CCDC181Q5TID7 509 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms